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11 Nov, 14 tweets, 9 min read
I want to flag this important work by @SCOTTeHENSLEY, which is the best study on whether there are pre-existing antibodies to #SARSCoV2 in uninfected people that affect risk of getting #COVID19. (1/7).
Much recent speculation (eg, NY Times by @ginakolata) on if some people have pre-existing antibodies to #SARSCoV2 (eg, from common-cold CoV) that affect risk to get #COVID19. Hensley paper is a well-designed study that *actually answers* this question (2/7)
They looked at sera collected prior to #SARSCoV2. Most sera didn't have antibodies that bound #SARSCoV2 spike, but some had modest binding, mostly to S2 but a few to RBD. None of these sera were potently neutralizing, and no trend for kids to have more of them. (3/7)
The pre-existing antibodies to #SARSCoV2 correlated with common-cold human *beta*-CoV antibodies, and so were probably elicited by them. Most of this was already sort of known before Hensley work, although Hensley study is best characterization of it. But then... (4/7)
The Hensley study took it a step further by actually testing if these occasional modest titers of pre-existing antibodies that bound to #SARSCoV2 affected how likely people were to subsequently get infected with #SARSCoV2, and how sick they got if infected. (5/7)
There was *NO* association between occasional modest levels of pre-existing antibodies that bind #SARSCoV2 & infection risk or disease severity. In other words, there is a bit of cross-boosting between seasonal beta-CoV & #SARSCoV2, but not enough to affect disease risk. (6/7)
I'm flagging this because we need to pay attention to good studies. So much speculation about how pre-existing antibodies might protect, cause ADE, etc. If you were to design *perfect study* to answer these questions, this is it! So read paper, & @ginakolata, cover this one (7/7)
Adding more Tweets to this chain as several people (eg, @SternLab @chngin_the_wrld @rcr_pereira @LindorffLarsen) have noted contrast between @SCOTTeHENSLEY study & one in @ScienceMagazine (science.sciencemag.org/content/early/…) saying children have pre-existing neut antibodies. (1a/7a)
First, @ScienceMagazine study doesn't say anything about protection: they just look at antibody titers. Only @SCOTTeHENSLEY study looks at protection, and finds none.

Second, there is something very strange about @ScienceMagazine study... (2a/7a)
@ScienceMagazine study performs the pseudovirus neut assays using 293T cells that do *not* express ACE2. Virtually every other paper in field, including work in our lab, has found that 293T cells can't be infected by spike pseudotyped virus unless you express ACE2. But... (3a/7a)
@ScienceMagazine study uses 293T cells w/o ACE2. This fact is buried in methods. But pre-print for that paper (biorxiv.org/content/10.110…), which shows exact same neut data, explicitly says that 293T cells had no ACE2, and that adding ACE2 didn't increase infection! (4a/7a)
The claim that 293T cells are well-infected by spike-pseudotyped virus and adding ACE2 does not increase infection is simply inconsistent with what we & every other paper in field has observed. Therefore I am suspicious of pseudovirus neut assays in @ScienceMagazine paper (5a/7a)
Admittedly, the @ScienceMagazine also reports neut data with live SARS-CoV-2 in VeroE6 cells, where this issue would not apply. Nonetheless, the fact that pre-print used cells w/o ACE2, and Science version shows same data but buries this fact, is strange... (6a/7a)
Therefore, fact that @SCOTTeHENSLEY paper is "only" pre-print whereas other made it past @ScienceMagazine peer review does not alter my scientific view that the Hensley pre-print is better: it is only one that looks at actual protection, & methods seems a lot more solid. (7a/7a)

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More from @jbloom_lab

11 Sep
In a new study (biorxiv.org/content/10.110…), we have completely mapped mutations to #SARSCoV2 that escape human antibodies, and shown that these "escape maps" predict how virus evolves under antibody pressure & inform design of escape-resistant antibody cocktails. (1/12)
Background: antibodies that target the #SARSCoV2 receptor-binding domain (RBD) are being developed as therapeutics & vaccines aim to elicit them. Among most potent RBD antibodies are set isolated by @VUMC_Vaccines, @seth_zost & Pavlo Gilchuk (nature.com/articles/s4158…) (2/12)
Key question is what mutations to #SARSCoV2 RBD escape antibody binding. Classic way to determine this is to grow virus w antibody & see what is selected. But this approach is incomplete: any given replicate stochastically selects at most 1 of possible escape mutations. (3/12)
Read 12 tweets
28 Aug
Lots of recent discussion about #SARSCoV2 re-infections, with 2 pre-prints describing possible examples. To contextualize these re-infections, I'd like to discuss the following papers, which document same-season re-infection with influenza, and re-infection with measles (1/6).
This paper (onlinelibrary.wiley.com/doi/full/10.11…) describes an otherwise healthy 9-year old who was infected twice in a 3-month span with H3N2 influenza, without any substantial antigenic change in the virus between the two infections (residue 67 in HA1 not major antigenic site). (2/6)
Although less extensively documented due to being from an earlier era, this paper (nejm.org/doi/full/10.10…) describes at least one case (the 16-year old) of a person who appears to have been re-infected with measles virus. (3/6)
Read 6 tweets
14 Aug
Excited to contribute to this extremely important #SARSCoV2 study by @GreningerLab that provides first direct evidence that neutralizing antibodies are a correlate of protection against #COVID19 in humans! (1/9)
medrxiv.org/content/10.110…
Perhaps *the* most important question in the #SARSCoV2 field right now is what immune responses protect against re-infection in humans. Knowing the answer to this question is critical for vaccine design and epidemiology. (2/9)
Lab studies show neutralizing antibodies are protective in animals, but there isn't comparable data in humans. To address this, large & expensive studies are currently being set up.

But @GreningerLab came up with a creative way to start answering this question right now! (3/9)
Read 9 tweets
8 Aug
Our new study led by @khdcrawford in collaboration with @HelenChuMD looks at the dynamics of neutralizing antibodies in the 3-4 months following recovery from infection with #SARSCoV2 (1/9): medrxiv.org/content/10.110…
To do this, @khdcrawford measured neutralizing antibody titers in longitudinal samples that @HelenChuMD's group had collected from 34 recovered individuals, whose infections ranged from asymptomatic to severe disease. (2/9)
This plot shows the dynamics for just one individual who is pretty typical: neutralizing antibody titers peak 3-4 weeks post-symptom onset, and then decline somewhat in the months following that. (See Fig 1A of pre-print for comparable data for all 34 individuals.) (3/9)
Read 9 tweets
18 Jun
We've experimentally measured how all amino-acid mutations to the #SARSCoV2 spike RBD affect ACE2 binding and expression of folded protein in a deep mutational scanning study led by @tylernstarr & Allie Greaney: biorxiv.org/content/10.110…

Why is this important? (1/n)
The RBD (receptor binding domain) enables #SARSCoV2 to bind to human cells. Evolution to bind human ACE2 was key to the emergence of this virus. Now it's also key to mitigating the virus: the most potent antibodies bind to RBD, and most vaccine candidates contain RBD. (2/n)
Before our study, the structure of the RBD protein was known but we didn't know how mutations affected it's function. Now we've measured how virtually all (3800 of 3819) amino-acid mutations affect binding to ACE2 and expression of the folded protein. (3/n)
Read 14 tweets
28 May
In a new study, we've measured how many children visiting a Seattle hospital have serological evidence of prior infection with #SARSCoV2: medrxiv.org/content/10.110…

Why is this important and what did we find? (1/14)
Children are under-represented in #COVID19 case counts. Are they less likely to be infected, or are their infections just overlooked because they often only get mildly sick? Serology identifies antibodies from infection independent of symptoms, so can help answer this. (2/14)
Our collaborator Jan Englund (@seattlechildren's hospital) collected 1,775 residual serum samples from 1,076 children in March & April during early Seattle outbreak. Samples from children seeking medical care for any reason: respiratory illness, surgery, routine care, etc. (3/14)
Read 14 tweets

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