Updated preprint: Model-informed COVID-19 vaccine prioritization strategies by age and serostatus.

Smart suggestions from formal/informal review mean that the paper still asks how demographics, contacts, vax efficacy, & seroprevalence affect prioritization by age, but now...1/
We asked whether transmission-blocking properties affect prioritization. Intuitively, as the vaccine's transmission blocking properties become worse, direct protection of adults 60+ became/remained the clear best prioritization—across countries, R0 values, & vaccine supplies. 2/
Btw—there's a nice piece by @MollyEFG & team that shows why indirect effects are critical. In the medrxiv version of their NatMed editorial, they have this figure, showing how transmission blocking effects are *extremely* valuable at pop. scale. nature.com/articles/s4159… Image
That figure shows that transmission blocking effects may be MORE valuable to public health than protective effects, particularly when moderate numbers of people have been vaccinated: enough to break down transmission in aggregate, but not enough doses to protect all directly. 4/
We also looked at whether decreases in vax efficacy among older adults might change the ranking of prioritization strategies. In short, we found that VE would have to drop to 25% or lower among the oldest adults to change priority from adults 60+. The IFRs by age are powerful. 5/
We then looked at how vaccine rollout speed affects prioritization. In short, faster rollouts are better (obvious) because in the models, the processes of (a) vaccination and (b) disease dynamics are both competing for susceptibles. Faster rollouts mean (a) outcompetes (b). 6/
The upshot of rollout speeds is that countries like NZ, Taiwan, S. Korea, who can roll out a vaccine prior to reopening have more options available. However, we still find that vaccinating adults 60+ would minimize mortality, even when vaccines are given prior to reopening. 7/
The idea to include rollout speed came from peer reviewers & from a great talk by @cmmid_lshtm's Mark Jit, from Frank Sandmann & team, looking at health and economic impacts of various vaccine properties (effectiveness, duration of protection) in UK. 👇 8/
medrxiv.org/content/10.110…
(CMMID model included rollout over time to make their calcs more realistic—I got curious about whether speed made a difference in our model. We found that it changes vax impacts, but doesn't change ranking of prioritization strategies. Grateful for cross-pollination of ideas!) 9/
Finally, we more fully developed the idea that vaccines might be redirected to seronegatives to accelerate the impact of limited supplies. Assuming past infection is more protective than no past infection, this would build pop immunity faster—but not sure if it's practical... 10/
For example, we modeled targeting seronegatives using serological tests, but actually, moving seronegatives to the front of the line may happen voluntarily. In fact, this article from @apoorva_nyc quotes Yvonne Maldonado on this point in the last section! nytimes.com/2020/12/05/hea…
In sum, we still find that, knowing what we know at present, & esp without evidence of strong transmission blocking, that—after doses go to front-line HCWs and other high risk / high vulnerability folks—adults 60+ should be prioritized. Revised paper here: medrxiv.org/content/10.110…

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More from @DanLarremore

2 Dec
Preprint: COVID-19 screening and surveillance are critical, but molecular tests haven't come close to meeting needs, and temperature checks fail. We modeled the epidemiological impacts of using loss of smell as a screening symptom. Here's what we found. 1/ medrxiv.org/content/10.110…
Loss of smell is an interesting screening symptom because it's highly specific to COVID, precedes most other overt symptoms, and typically lasts ~1 week. Critically, its prevalence goes from ~45% when self-reported up to ~80% when a test is used. 2/
Contrast this with fever: ~20% prevalence, not specific to COVID, and lasts 1.5 days on average. So why do we still screen for fever? You can look for it in seconds with a contactless thermometer.

Could rapid, contactless, cheap tests for anosmia, impact transmission? 3/
Read 15 tweets
28 Oct
Slovakia (pop 5.5M) is attempting a mass COVID-19 screening campaign using rapid antigen tests. The public health community is going to learn a lot. Here's what I'm looking for...
1/

spectator.sme.sk/c/22519165/cor…
Slovakia, like Europe, is experiencing a rapid acceleration of infections & deaths, and is starting to use curfews & lockdowns.

A pilot phase tested 140K people with rapid antigen tests, found 5.5K positives (4%).

They'll test the nation over next 2 weekends! Good idea?
2/
First, there are reasonable critiques of rapid Ag tests related to their sensitivity—do they miss too many infections?—and their specificity—do they falsely tell uninfected people that they're positive?

Re sensitivity: every broken transmission chain is a victory, BUT...
3/
Read 9 tweets
24 Oct
Here is my summary of an exciting new @NBA + longitudinal COVID testing paper.

Writing a thread about COVID and the NBA has been on my bucket list for some time, so today I decided to box out some time and give it a shot. 1/n

medrxiv.org/content/10.110…
Most of what we know about viral dynamics during SARS-CoV-2 infections comes from samples taken *after* symptom onset. From symptoms onward, viral loads slowly fadeaway.

What do viral loads look like between exposure and symptoms? 2/n
In this study, researchers in the NBA bubble recruited players, coaches, vendors, and others to sign up for a longitudinal study with regular COVID testing.

In other words, the researcher ran a classic pick-enroll-screen in the NBA bubble. 3/n
Read 12 tweets
1 Jul
How does effective viral surveillance change when (1) some people refuse to participate, and (2) sample collection errors lead to lower sensitivity, indep. of a test's limit of detection? Questions raised by @jhuber @awyllie13 & others after I posted this preprint last week.👇 1/
I love twitter+preprints precisely because of this community. In the updated preprint, we've corrected a couple typos, and created a new supplement, "Adjustments for false negatives and test refusal" which I'll quickly summarize below. 2/ medrxiv.org/content/10.110…
Previously, we estimated the impact of a policy on R by measuring the "infectiousness" the testing, relative to no testing. The formula's values correspond to the heights of bars in plots like this one. f0 is the leftmost hatched bar. ftest is the total height of a policy bar. 3/
Read 8 tweets
25 Jun
Preprint: Viral surveillance testing is crucial, but not all surveillance strategies are equal. We modeled the impacts of test frequency, assay limit of detection, test turnaround time, measuring impact on individuals & epidemics. Here's what we found. 1/ medrxiv.org/content/10.110…
The first finding is that limit of detection matters less than we thought. There is only short (1/2 day) window when qPCR is superior during the exp growth phase. We showed this in a simple viral load model, but any model with exp growth between Ct40 and Ct33 would confirm. 2/
So only a high-frequency testing scheme will take advantage of that short window. However, high-frequency testing schemes will have a high impact on the reproductive number, *regardless* of test LOD. ➡️ Ruling out higher LOD tests for surveillance purposes would be a mistake. 3/
Read 18 tweets
18 Jun
My colleagues and I are formally seeking a retraction of the recently published “Identifying airborne transmission as the dominant route for the spread of COVID-19.” The full text of our letter to the PNAS editorial board can be found here. 1/
metrics.stanford.edu/PNAS%20retract…
It is important that science, especially now, be as rigorous and methodologically sound as possible. However, this paper suffers from numerous and fundamental errors that undermine the foundation of its conclusions. The paper is linked here. 2/ pnas.org/content/early/…
Masks help in the fight against COVID-19. Our call for one study to be retracted should not detract from that important message. Indeed, a recently published meta-analysis showed that mask use (N-95 esp), could result in large risk reduction. 3/
thelancet.com/journals/lance…
Read 6 tweets

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