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More from @franciscodeasis

14 Feb
[Thread] Pangolin CoV... or Bat CoV in pangolins samples?
TLDR: A researcher of the team that sequenced the pangolins samples had taken samples in the mine of RaTG13 and in the place where RmYN02 was collected, also catched bats in Yunnan. Probably contaminated pangolin samples
@Daoyu15 was the first to note that the raw sequence reads of the pangolins “contained unexpected reads and was in serious risk of contamination” in early June 2020. But now we can explain how it was possible to happen this in Guangdong
zenodo.org/record/4450267…
Jin-Ping Chen, the corresponding author of the first paper of the pangolins, and LiBiao Zhang, who has been sampling the mine of RaTG13 and the place in Mengla where RmYN02 was collected, are close colleagues in GIABR & GIZ
ncbi.nlm.nih.gov/pmc/articles/P…
giz.gd.cn/yjdw_/yjy/
Read 10 tweets
14 Feb
[Thread] Unnoticed Lab contamination in the samples of first COVID-19 infected patients.
1/ Article: “There was a simultaneous undetected outbreak of Nipah in Wuhan”

Explanation:
2/ Article: “Non-SARS-CoV-2 genome sequences identified in clinical samples from COVID-19 infected patients”
peerj.com/articles/10246/

Explanation:
Read 4 tweets
2 Feb
@Daoyu15 @Undergroundsar3 @Real_Adam_B @BillyBostickson @Rossana38510044 @luigi_warren @babarlelephant @AntGDuarte @MonaRahalkar @flavinkins @KevinMcH3 @DrAntoniSerraT1 @_coltseavers @rowanjacobsen @uacjess @RolandBakerIII @TheSeeker268 @still_a_nerd @jjcouey @Harvard2H @ydeigin @CarltheChippy @ico_dna @nerdhaspower @scottburke777 @JJ2000426 @BahulikarRahul @alimhaider @antonioregalado @Ayjchan @R_H_Ebright @BretWeinstein @sanchak74 @JCalvertST @PeterDaszak @TheSeeker @nature @threadreaderapp Max Genbank ID (GI) by Modification date in nuccore:
Jan 07th: 1,790,159,865
Jan 08th: 1,791,050,251
Jan 09th: 1,791,354,567
Jan 10th: 1,794,858,040
Jan 11th: 1,795,744,542
Jan 12th: 1,796,141,132

MN908947 (Wuhan-Hu-1): 1,791,269,088
So, created on Jan 9th, or even on Jan 8th
Read 7 tweets
27 Jan
@nature cc reviewer @c_drosten, this article must be corrected to acknowledge that SADSr-CoV 3755 was from the same mine of Mojiang (Yunnan) as RaTG13. Any reader of the paper thinks it came from Guangdong, and that is not true nature.com/articles/s4158…
As you see, its ID is in the middle of the IDs of the 1st trip of WIV to the mine (Ge et al, 2016).
Obviously, disclosing its full sequence is also a must, not only the N. Image
Wang et al. (2019) stated it was from Yunnan in their Fig 1.
Ra7347 most probably from the mine too. And 140351 too (they messed samples of May-14)
With so many errors, lack of info, cheatings and covers, the phylogenetic trees are totally useless! Shame
ncbi.nlm.nih.gov/pmc/articles/P… Image
Read 4 tweets
28 Nov 20
@Rossana38510044 @luigi_warren @babarlelephant @AntGDuarte @MonaRahalkar @BillyBostickson @flavinkins @KevinMcH3 @DrAntoniSerraT1 @_coltseavers @rowanjacobsen @uacjess @RolandBakerIII @TheSeeker268 @Daoyu15 @still_a_nerd @jjcouey @Harvard2H @ydeigin @CarltheChippy @ico_dna @Nomdeplumi1 @Real_Adam_B @nerdhaspower @scottburke777 @JJ2000426 @BahulikarRahul @alimhaider @antonioregalado @Ayjchan @R_H_Ebright @BretWeinstein @sanchak74 @JCalvertST [Thread] Addendum of WIV in Nature.
What we know about the samples and the visits to the mineshaft of TG?
TLDR: 7 trips: 4 already known (Ge et al., 2016), plus other 3 with massive sampling until 2015, including 7896-clade. All already in Latinne et al. (2020)
#originsofSARSCoV2
Read 38 tweets
18 Nov 20
@AntGDuarte @Rossana38510044 @jhouse678 @nature @edwardcholmes @arambaut @angie_rasmussen @K_G_Andersen What we know about the 7896 clade? Let's recap:
1/ They were published in June 2020 as part of a batch of 630 viruses of Latinne et. (2020). No details were given
ncbi.nlm.nih.gov/nuccore/?term=…
@AntGDuarte @Rossana38510044 @jhouse678 @nature @edwardcholmes @arambaut @angie_rasmussen @K_G_Andersen 2/ They are exactly 8 betas (the 8 remaining SARSr of the addendum?). Some are part of samples with not declared co-infections.
7896=7905=7907=7909=7921=7924, and 7931 with 2dS (at the end), and 7952 with those 2dS + 1 dS more


.
Read 31 tweets

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