Thread summarising an important presentation on the AstraZeneca trial results for South Africa.

Key points:

➡️ Efficacy initially seemed to be ~75%, but dropped to 22% against SA 🇿🇦 variant.
➡️ Past COVID-19 (original) doesn't protect against reinfection by the SA 🇿🇦 variant.
This was a relatively small trial with only 1,749 mostly young, healthy participants.

People were given two doses of the vaccine about 28 days apart.
The relatively small number of people in the trial makes it suitable for exploring the efficacy of the Oxford/AstraZeneca vaccine against mild-to-moderate disease only.

The trial lacks statistical power to tell us the efficacy of the vaccine against severe disease.
The trial began in June 2020, before the emergence of the South African variant (in September), which is thought to be more transmissible and more virulent.

By the end of the year, the variant accounted for almost all cases in South Africa (orange area of the graph).
The vaccine produced a good immune response in South African participants, which was comparable to people receiving the vaccine in the UK and Brazil.
The initial results (until the end of October, before the South African variant was prominent) were promising, and suggested an efficacy of 75% after a single dose.
Unfortunately, viruses evolve. It is thought that the very large number of people who had been infected in South Africa may have created pressure that led to the virus mutating.
By the end of the trial, 42 cases had been detected.

Sequencing was performed for 41 of these, and 39 (95%) were due to the variant.
Laboratory experiments showed that the antibodies produced by the vaccine were less effective against the variant.
At the end of the trial, efficacy of the Oxford/AstraZeneca vaccine against mild-to-moderate COVID-19 (overwhelmingly caused by the South African variant), was only 22%.

A caveat is that small numbers make this estimate imprecise.
In a separate trial (the Novavax trial) researchers looked at what happened to people in the placebo group, based on whether they had previously been infected with SARS-CoV-2.

They found past infection did not provide immunity against reinfection with the South African variant.
However, in good news, the Novavax vaccine could still protect against the South African variant, although the efficacy dropped from 95% (against the original strain) to 60% against the South African variant (49% if people living with HIV were included).
While vaccine efficacy against mild-to-moderate disease has taken a hit with regard to the South African variant, it's expected vaccine efficacy will fare better against severe disease.

This was true for the Johnson & Johnson vaccine.
The Johnson & Johnson vaccine uses similar technology to AstraZeneca, and the immune response induced by these two vaccines is similar.

For that reason, the AstraZeneca vaccine may well retain good efficacy against severe disease.
Antibodies aren't the only thing that's important.

T-cells likely play a role in preventing severe disease, and there's evidence to suggest the T cell response is not substantially affected with regard to the South African variant.
In summary, the Oxford/AstraZeneca vaccine does not appear to provide protection against mild-to-moderate disease caused by the South African variant.

However, the Novavax vaccine still retains moderate efficacy.
The South African results are a reality check.

Vaccines are still the way out of this pandemic, and high-efficacy vaccines like the Novavax vaccine still work reasonably well.

However, we must reduce transmission so that opportunities for the virus to mutate are reduced.
The Oxford/AstraZeneca vaccine remains a useful tool for the time being in badly affected regions where the South African variant is not common (e.g., the United Kingdom).

It will saves lives there.
The full presentation can be found at the link below.

It's well worth watching. There's more data than you can poke a stick at, presented by some great scientists.

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More from @DrZoeHyde

7 Feb
Australia must now reconsider its plan to use the Oxford/AstraZeneca vaccine, and instead use a high-efficacy vaccine like Novavax.

We've an agreement for 51 million doses of Novavax and can manufacture it domestically.
#auspol #COVID19Aus
amp.ft.com/content/e9bbd4…
According to preliminary results seen by the Financial Times, the Oxford/AstraZeneca vaccine does not appear to prevent mild and moderate COVID-19 caused by the South African variant.
While the company believes the vaccine may still prevent severe disease, there are now question marks as to whether it will be sufficient to prevent the debilitating condition known as long COVID, which is common even in mild disease.
Read 5 tweets
6 Feb
Study describing the incidence of PIMS/MIS-C in South Korea. From May to November 2020, 2,287 COVID-19 cases were detected in children. During this time, 3 serious MIS-C cases occurred, equating to an incidence of approximately 1 in 800 children.
wwwnc.cdc.gov/eid/article/27…
South Korea has largely suppressed COVID-19, and has excellent testing and contact tracing.

While it’s likely they missed some SARS-CoV-2 infections in children (which would overestimate the incidence), they probably missed some mild MIS-C cases (which would underestimate it).
Therefore, 1 in 800 is probably the upper bound for the true incidence of MIS-C.

Assuming a worst-case scenario, where there were actually 5 times as many SARS-CoV-2 infections in children than detected, the lower bound would be 1 in 4,000.
Read 6 tweets
5 Feb
Important pre-print study (but from a good team, including @florian_krammer), showing a single dose of a mRNA vaccine may provide superior protection to two doses, in people who’ve already had COVID-19. This could free up the vaccine supply, enabling more people to be vaccinated.
The researchers found that when people who’d previously been infected were given a single dose of a mRNA vaccine, their resulting antibody titres were 10-fold higher than people who hadn’t been infected, but received two doses of a mRNA vaccine.
The researchers also found the side effects of the vaccine were more pronounced in people who’d previously been infected (though none were serious).

Thus, if these people only need to be given a single dose of the vaccine, this could potentially save them unnecessary discomfort.
Read 4 tweets
2 Feb
(1/6) This is quite a concerning development. An additional mutation (E484K; a key mutation in the South African variant) has now also been detected in a limited number of people infected with the UK variant.

Laboratory experiments suggest vaccine efficacy may be reduced.
(2/6) Here’s a nice figure from @K_G_Andersen, showing the different mutations in the UK, South African, & Brazilian variants.

E484K has now also appeared in multiple people in the UK, suggesting a process of convergent evolution. This means it’s likely to happen elsewhere, too.
(3/6) So far, this enhanced UK variant has been detected in 11 of 214,159 samples tested.

The E484K mutation previously appeared in a cluster of 32 cases of the original strain in Liverpool.
bbc.com/news/health-55…
Read 6 tweets
31 Jan
Case report of a hospital COVID-19 outbreak probably caused by airborne transmission. A child with an infected mother was admitted, after which 6 healthcare workers, 2 child patients, and 1 parent tested positive.

H/T: @CPita3 via @lisa_iannattone.
academic.oup.com/ofid/advance-a…
Three of the 6 healthcare workers had no direct contact with the mother or child and maintained a distance of approximately 2 metres during a ward round and dietician consultation. All 6 wore surgical masks. No aerosol-generating procedures were performed.
An additional 3 out of 4 contacts (2 child patients and one mother staying in the same room) tested positive. They were staying at a distance of more than 2 metres from one another, although brief contact over a shorter distance cannot be ruled out.
Read 11 tweets
29 Jan
(1/7) Spectacular news from Novavax. The efficacy of their vaccine matches Pfizer & Moderna, but it doesn't have the same ultra-cold storage requirements. ❄️

UK phase 3 trial results:

95.6% original COVID-19
85.6% UK 🇬🇧 strain (#B117)
89.3% efficacy overall
(2/7) Importantly, the vaccine was tested in a large number of people (>15,000) in the UK, aged 18-84 years.

Almost a third (27%) were aged over 65 years.
(3/7) The company also announced results of a smaller phase 2 trial of their vaccine in South Africa (>4,400 people).

⚠️ Over 90% of cases that were detected in the trial were attributable to the South African variant, which did affect the vaccine's efficacy.
Read 7 tweets

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