1/ Covid (@UCSF) Chronicles, Day 331

Today, UCSF Medicine Grand Rounds. I'll start w/ quick update on local scene & then review the terrific presentation on vaccines and masks by @monicagandhi9. The entire 75 minute conference is here – worth watching:
2/ While I’ll cover Monica’s presentation in this thread, there's more. At 39:30 Marguerita Lightfoot, chief of Division of Prevention Sciences, discussed vaccine hesitancy in communities of color. At 52:00, Robert Rodriguez, @UCSF Prof. of Emergency Medicine, & @DrEricGoosby
3/ @UCSF Professor of Medicine & former UN Special Envoy on TB, discussed their experience on President Biden’s Covid-19 Advisory Board. Just as @Atul_Gawande told me @inthebubblepod
tinyurl.com/13honosl, Rob & Eric were impressed by the Biden team,….
4/ … and immensely frustrated by the fact that they got zero support from anyone in the prior administration. (In a normal world, outgoing agencies prepare big briefing books with current status, data, etc. With Trump transition: nada.) Interesting discussion, worth watching.
5/ Before I do Grand Rounds, quick recap of the #'s – all going in right direction. @UCSFHospitals, 45 Covid pts, 10 on vents. Slow improvement continues (Fig). More impressive: test positivity rate is down to 2.2% overall – 7.1% in pts w/ symptoms (was 21% one month ago) and…
6/ …1.3% in asymptomatic patients (was ~4% one month ago) (Fig). As always, this is my poor man’s way of guessing the odds that a person near me in a SF store has asymptomatic Covid. So even if 5% of Covid in NorCal is the UK (or a similarly more infectious CA) variant,…
7/ …, a person is still vastly less likely to be infected now than in January due to the lower prevalence. This is a key principle: risk of an encounter is the product of the physics of the encounter (distance, masking, contagiousness of the virus) AND the probability that the…
8/ …nearby person/people are carrying SARS-CoV-2. So fall in cases/test positivity rates are critical & make things far safer now than last month, notwithstanding the growing prevalence of more infectious variants. But can’t let guard down since prevalence of variants going up.
9/ In SF: falling cases, hospitalizations, & test positivity consistent w/ @UCSF. 143 cases/d, down 2/3rds in past mth (Fig L). Test pos 2.9%. Hospitalizations 135, down 50% from peak (Fig R). All good, & strong evidence that more infectious variants aren’t a major factor… yet.
10/ Won’t go through all the other #s but they're consistent w/ drops in SF. Map (@axios & @COVID19Tracking) shows improvements in every state – combo of end of holidays, changes in behavior, & immunity (mostly natural, tho vaccination will begin to play a bigger role over time).
11/ Speaking of vaccination, here are highlights of @MonicaGandhi9's talk (6:10-39:30 in Grand Rds). On this useful slide, Monica summarizes trial results for 6 major vaccines. Key: efficacy against mild disease varies, but all are >95% protective against hospitalization.
12/ Starting @ 14:55, Monica reviews in detail results of Pfizer, Moderna, and J&J trials. Slide shows efficacy results from J&J, which should be a slam dunk for EUA approval after FDA advisory cmte meets on Feb 26. Approval will add big new supply, & far easier option for many.
13/ (At 52:30, Rob Rodriguez discusses work he and his group are doing to vaccinate people in ERs – particularly marginally housed and others who don’t have a PCP and can’t make it to a pharmacy or hospital. How much easier that would be if patients only needed a single shot!)
14/ Monica's been quite public about her belief that – while we can’t say for sure how MUCH vaccination lowers viral carriage/transmission – we CAN be confident that it does lower it somewhat. Her 4 lines of evidence are on this slide, and are pretty convincing, at least to me.
15/ Want real world evidence that vaccination works? Here’s data from Israel, which made deal w/ Pfizer that allowed country to vaccinate way faster than anyone else in world (Israel: 68 doses/100 people; US 15/100). Curve shows vaccine’s major impact on cases, hospitalization.
16/ How worried to be about variants & vaccine-resistance? A little, but, per Monica, not too much. On L, quote from @UCSF virologist Warner Greene on fact that J&J appears to prevent severe disease, even w/ So. African variant. On R, summary of why she’s not terribly concerned.
17/ Monica (& others) feel messaging re: vaccines has been too negative, including “you can’t change your behavior after vaccination.” Here’s her summary, including a rec that it’s ok for 2 vaccinated people to mingle without restrictions. While CDC hasn’t endorsed that yet,…
18/ … new rec that quarantine isn’t needed if vaccinated person is exposed seems like a prelude to a rec that vaccinated folks can mingle freely. I’m still a bit cautious about this (I still maintain a little distance) but suspect that this rec is coming. tinyurl.com/3t8ostfe
19/ Finally, CDC endorsed advice that Monica & aerosol expert @linseymarr helped craft tinyurl.com/g8o6w5zy: benefits of double masking to increase protection. Key is both better filtration with 2 masks & fewer gaps. Particularly w/ variants growing, this seems sensible.
20/ After the talk (at 35:00), we did lightning round of hot vaccine topics. A) Pregnancy & vaccines: “mRNA vaccines are very safe... no biological reason to think they wouldn’t be.” B) Duration of immunity after vaccination: some indication that combo of B & T cell response…
21/ …may last for many years (maybe 10 or more), though might shorten with variants; C) What kind of mask does she wear?: “I like cloth with an insert”; D) Might we be able to get away with single dose of mRNA vaccine after past infection? Very enthusiastic; once peer reviewed…
22/ … paper is out, it may be ready for prime time.; E) Delayed 2nd doses: “I liked your idea from the beginning, and I like it today, because of the Israel data” (as well as UK data). “I really applaud getting the population immunized more quickly.” tinyurl.com/4gw77p08
23/ Finally, F) "If you could get J&J today or wait a month for Pfizer or Moderna to be available, what would you do?" Answer: “I would get the J&J – I’m so excited about the reduction of severe disease and the single dose.”
24/ Kudo’s to Monica; her talk is a superb deep dive in to the current & future state of vaccination and new recommendations on masking. Other talks were great too. Again, Grand Rounds is here (75 minutes):
25/ I also hope you’ll listen @inthebubblepod, incl. inspiring show yesterday w/ @Captsully Sully Sullenberger. Coming next Monday, I talk to @ProfEmilyOster on Covid & the schools. And next Thursday @UCSF grand rounds: more w/ @atul_gawande. Stay safe.
podcasts.apple.com/us/podcast/how…

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More from @Bob_Wachter

10 Feb
1/ Covid (@UCSF) Chronicles, Day 329

So many competing forces & trends. As dramatic as a thriller, but very decidedly – and tragically – as real as it gets. Everything's leading up to a decisive moment in late March, when we see if we’ve won or lost The Race vs. the variants.
2/ More on that after update on local/nat'l situation. Not bad, tho the usual caveat – while far better than last mth, these are still very high case counts, test positivity rates, & hospitalizations – much higher than the peaks of last summer. Covid-wise, it’s still pretty hot.
3/ @ucsfhospitals, 47 pts, 13 vents (Fig L) – I'm still concerned w/ plateau, but hospitalizations are a lagging indicator. Reassured that test positivity rates are falling – now 2.4% overall, down >50% over last month. Test positivity in asymptomatic pts: down to 1.4% (Fig R).
Read 24 tweets
3 Feb
1/ Covid (@UCSF) Chronicles, Day 322

Today, an update on local situation. Then my take on a few issues of the day. There’s some great news, some good news, & some bad news (in the form of variants, lurking just over our horizon). I think we can win The Race, but it’ll be close.
2/ Let’s start w/ local situation & then move out – themes are pretty consistent across U.S. @UCSFHospitals, 50 pts in hospital, 13 on vents (Fig L). Test positivity 3.8%; 9.3% in pts w/ symptoms, 2.6% in asymptomatics (Fig R). While hospitalizations & test positive rates are...
3/ … down 30-50% over past 2 wks, I worry that the curves are now a bit plateaued. (After past surges, once cases/test positivity rates started falling they continued to do so.) While I think we'll keep getting better, this bears watching.
Read 25 tweets
29 Jan
1/ Covid (@UCSF) Chronicles, Day 317

Today was medical grand rounds: brief summary below but worth watching for latest on vaccine distribution in SF, current state of the pandemic, & the variants – overall & with a specific focus on the UK. It’s here: tinyurl.com/yyzggsmv
2/ We began w/ Susan Philip, acting health officer @SF_DPH, talking about vaccine roll-out in San Francisco. As expected, as distribution has improved the problem is increasingly “supply, supply, supply.” Goal: to vaccinate 10,000 people per day in SF. Three pronged strategy: …
3/ …high-volume vaccination sites, community pharmacies, & smaller community-based sites (mobile hubs, clinics). @UCSFHospitals & other healthcare systems helping (we’re running big site @CityCollegeofSF). Plan is to be provider agnostic (pts can go to any site to get vaccine).
Read 25 tweets
22 Jan
1/ Covid (@UCSF) Chronicles, Day 310

What a joy watching Fauci's press conf. today. Last yr must have been torture for him, a brilliant man of great integrity. How liberating to speak truth w/o looking over his shoulder, & how uplifting to listen to him!
2/ At 11:40, Fauci says, “One of the things that we’re going to do is be completely transparent, open, and honest. If things go wrong, not point fingers but correct them, and to make everything we do based on science and evidence.” Hallelujah! leonardcohen.com/video/halleluj…
3/ Today a brief update on the local & CA situation, and a few comments on the two big issues: the vaccine roll-out and the variants.

The bottom line is that we’re turning a corner on the winter surge, at UCSF, in SF, in CA, and in the U.S. Things are still pretty bad…
Read 22 tweets
19 Jan
1/ Covid Chronicles, Day 307

One of the most challenging parts of Covid has been grappling with decision-making under uncertainty. It’s natural for MDs to weigh risks & benefits; med school trained us in probabilistic decision-making. But it’s an unnatural act for most people.
2/ And it's even harder w/ Covid. Just as you’ve gotten comfortable with a situation – Should I go to the store? Have a drink outside w/ friends? – the numbers change.

So let’s take a few minutes to go through some math – the kind of math you need to make rational choices.
3/ Let’s start w/ a basic tenet of decision-making in Covid: there is nothing that's perfectly safe, & nothing that's totally risky. Everything is about probabilities. What do I mean? A good cloth mask isn’t 100% effective, but it does lower chances of getting infected by 70-80%.
Read 25 tweets
15 Jan
1/ Covid (@UCSF) Chronicles, Day 303

Exciting day. @UCSF Grand Rounds, we covered our vaccine rollout, vaccine issues more generally (w/ @drpauloffit), & then the new viral variants (w/ Charles Chiu @cychiu98. On youtube here: Worth a watch.
2/ A few highlights. First, the UCSF vaccine experience, w/ Susan Smith & Desi Kotis. We’ve now delivered 20,261 shots, and we’re doing well with just-in-time vaccination –we've injected 84% of supply. We get ~1 week notice of when more is coming, but it’s not always accurate.
3/ Our current dashboard is below. We’ve now offered vaccine to 99% of those in Phase 1A. 77% have received first dose, and 17% have received 2nd dose. 83% of our highest priority group (subgroup a) have been vaccinated; 56% have already received shot #2.
Read 21 tweets

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