THREAD on England short term Covid outlook:

Thread on some of the implications of latest SAGE SPI-M models about English roadmap, step 4 & Delta.

TLDR: medium term v uncertain but in short term expect hospital admissions to keep rising.
2. They point out that current increase in cases will only stop if at least one of below happens:
1) people change their behaviour
2) govt changes policy (more restrictions and/or more public health interventions)
3) enough immunity is built up (through vax or infection)
3. Govt is basically doing 3 -> trying to get as many people fully vaxxed as fast as possible & tolerating high infections in younger people in the meantime.

It also delayed step 4 deciding (wisely!) that throwing petrol onto the fire wasn't a good idea.
4. Note that this *isn't* a change in policy since the roadmap was designed to be flexible. Unfortunately all the govt rhetoric beforehand obscured this fact.

But now, until option 3 (more immunity) kicks in, we have a situation of rapidly increasing cases.
5. SAGE note that while vaccines have meant fewer infected people need hospital than before, the link between cases & hospital is still there and has stabilised recently so that daily hospital admissions are now about 4% of what daily cases were 10 days earlier.
6. This means that if cases double, then admissions would be expected double too (so if 100 cases results in 4 admissions 10 days later, 200 cases would result in 8 admissions etc).
7. We have seen cases double every 9 days or so recently. We can expect hospital admissions to do so as well.

96 people with Covid were admitted on 4th June. 9 days later, on 13th June, 187 people were admitted - almost double.
8. As SAGE points out, 187 admissions is 4 doublings away from Apr 2020 peak and less than 5 from Jan 2021 peak.

At 9 day doubling, that's *5 to 7* weeks from now - just after new July step 4 date...
9. The next ten days are mostly locked in from recent case rises. That means in 10 days we will likely see over 250 hospital admissions a day (using 4% relationship as approx estimate).
10. But then what? how soon will the vaccinations kick in to stop growth? Good weather will help... as will school holidays from mid July.

But over *next* few weeks, cases will keep growing.
11. Some signs that growth is slowing a bit in England - perhaps cases are doubling every 14 days now instead of 9. This is good as it gives us 8 weeks instead of 5 before reaching Apr 2020 admission levels.

And *more* time for vaccinations, behaviour & policy to prevent this.
12. Things are really uncertain as to when & if vaccination will stop hosp admissions on its own - too much depends on exact transmissibility, severity, vax resistance of Delta and vax uptake.
13. Delaying the roadmap 4 weeks helps bring down cases *and* hospitalisations, AND also gives time to resolve some of the uncertainties.

At the moment estimated peak daily hosp admissions range from a few hundred (best case) to well over Jan's 4K peak (worst case) in Aug/Sept.
14. Speed of vaccine roll out has an impact but *not* that big.

Different assumptions about Delta's characteristics (esp transmissibility) have bigger impact on size of peak.

Plus we don't know how waning vax protection will affect things.
15. My personal feeling, assuming 19 July goes ahead & little vax waning, is that there will be at least 2 or 3 more doublings before things *might* reduce. That means tens of thousands of daily infections and somewhere between 1,000-2,000 daily hospital admissions in 6-8 weeks.
16. This puts me at the more optimistic end of the SAGE models (!) - mainly cos I think their central vax efficacy estimates are still a bit pessimistic. I hope that if I am wrong it's cos I am not optimistic enough - so much uncertainty still about the medium term.
17. If I'm right, then this would not be as bad as we saw in Jan or last April (in terms of hospitals or deaths) but it *will* be bad. The NHS is already stretched with its backlog - we shouldn't be adding *any* more stress.
18. Even 2 weeks of tens of thousands of daily cases means hundreds of thousands of overall cases, which means tens of thousands more (mostly young) people living with long covid.

It means hundreds of thousands of chances for further mutation that can resist vaccines.
19. And these scenarios *are* avoidable. We are *still* not properly supporting people to isolate (financially and practically), we aren't testing contacts of cases, we aren't supporting workplaces and schools to improve ventilation
20. We aren't empowering local public health directors to impose restrictions if they deem it necessary - nor local alities with the resources to support affected people and businesses.

We aren't communicating the much wider list of symptoms that should prompt a test.
21. And we *still* haven't fixed our border policy, leaving us open to importing (and exporting for that matter), new, even worse, variants.
22. *if* we can avoid new variants emerging or being imported, we should be in a much better position by end of September - especially if we can extend vaccine protection to secondary school children.

But we mustn't accept a narrative that this summer wave was or is inevitable.
23. The policies that allowed Delta to become dominant in 8 weeks & lack of govt interest in actually reducing cases, will now lead to more ill health, more strain on the NHS and more deaths.

We should be furious. /END

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More from @chrischirp

15 Jun
SHORT THREAD on the US & Covid:

The US has made rapid progress in vaccinating its population, and supply is not an issue.

But demand has steadily fallen since April. The UK meanwhile has kept up a more constant rate of vaccination - we've not exhausted our demand yet! 1/5
And this is translating into population coverage.

The UK is ahead of the US now in both first doses *and* people fully vaccinated (even with our longer interval between doses) - and our coverage is increasing faster than the US. 2/5
The US has more vaccine hesistancy than the UK and this is now making itself felt - with particularly Republican states having lower rates of vaccine uptake.

States are trying to incentivise vaccination through prizes, food, beer...

newsweek.com/states-sending… 3/5
Read 5 tweets
4 Jun
Here are cases in 4 regions - all showing highest rates in secondary school children - and increasing and moving up to adults over time too.
Here is data from PHE yesterday showing the the *top activity* by far for new confirmed cases was a child in school.
Data from a couple of weeks ago showing the incredibly high rates of infection in secondary school age children in variant hotspots - higher than their equally unvaccinated older counterparts.
Read 5 tweets
31 May
THREAD Some back of the envelope examples about how things could get difficult even with vaccination.

This is *no* replacement for the proper SAGE Spi-M models but gives you the idea. (11 tweets)
Between Oct & early Jan there were about 2.3 million confirmed cases of Covid, 135K hospital admissions & 28K deaths. Hardly anyone was vaccinated.

If we had a similar situation now but WITH vaccination then cases would be lower & admissions (~25K) & deaths (~3K) MUCH lower.
I think this is what most people have in their minds when they don't believe it could get bad this summer.

And if cases on same or lower scale then that is true - vaccination (particularly of vulnerable) protects us & the NHS.
Read 12 tweets
31 May
THREAD latest on B.1.617.2 variant in England:

B.1.617.2 (1st discovered in India) is now dominant in England. Here is a thread summarising latest PHE report and Sanger local data.

TLDR: it is NOT good news. 1/7
Firstly, B.1.617.2 is now dominant in England.

This data excludes traveller data and surge testing as much as possible.

In absolute numbers, B.1.617.2 ("India") overtook B.1.1.7 ("Kent") about 15 May.
PHE report estimates a few days earlier. 2/7
B.1.617.2 is now dominant in almost every region of England.

Even NE and Yorks are catching up very fast. 3/7
Read 9 tweets
30 May
THREAD on variants & borders:

SAGE warned in Jan that a red list border policy "geographically targeted travel band" was unlikely to keep variants out.

This is because we don't know in advance where the *next* concerning variant is coming from.

assets.publishing.service.gov.uk/government/upl…
1/11
UK spent Jan & Feb making red list policy about variants discovered in Brazil & S Africa. But wasn't paying any attention to the situation, in say, S Asia.

SAGE also said that red list policy works best if implemented very quickly & if in countries with low UK traffic. 2/11
India has strong travel links with the UK and started its awful surge in March. By 24th March, the Indian govt was warning about a new fast spreading variant.

UK waited until 23rd April before India was added to red list - and it did work to reduce travel. But too late. 3/11
Read 11 tweets
29 May
THREAD on covid and schools:

This week, the ONS infection survey which tests a random representative sample of people in England every week, showed early increases in school age kids.

ons.gov.uk/peoplepopulati… 1/7
Weekly Public Health England data from confirmed cases also shows cases highest in 10-19 year olds.

Cases rose in 5-9 & 10-19 yr olds in March when schools went back. They didn't end April / early May prob cos of low community case rates.

But now they are rising again. 2/7
Above were rates for whole of England.

If we look at the three local authorities with highest levels of new variant B.1.617.2, we can see school age kid rates are *really high* - and higher than their equally unvaxxed 20-24 yr olds. 3/7
Read 7 tweets

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