Headlines like the one circulating about India always need to be taken cautiously: until we have sequence data, speculation about a new variant or new mutations is entirely that - speculation.
But let's dig into what's being reported right now about 40,000 breakthroughs...
Headlines are saying things like "40,000 breakthrough COVID cases". But what does breakthrough mean here? Most generally, at least in Western media, this is used to refer to infections in fully-vaccinated (commonly 2-dose) people.
2/N
However, 1 site reporting the 40,000 defines this as "people contracting the disease a second time or fully vaccinated".
Another implies this is infection after 1 or 2 doses.
So lets look at all breakdowns:
According to Kerala's dashboard, 15,759,471 have 1 dose, 6,442,507 have 2 (these also seem to be included in 1 dose counts).
So, if 40,000 is out of fully vaccinated people, that would be 0.6% of vaccinated people.
If it's 40,000 out of everyone with 1 or more dose, that's 0.25% of vaccinated people.
If it's 40,000 out of everyone previously infected (3,415,595) or fully vaccinated (6,442,507) (assuming none of these people overlap), that's 0.4%.
5/N
Even though these numbers change a little bit depending on definition, the takeaway is that this is well within the expected efficacy of vaccines.
It's easy for big numbers to sound scary, but context matters! Here, the number of people vaccinated is much, much bigger!
6/N
Of course, ongoing genetic surveillance, including of breakthrough cases, remains critical for keeping an eye on new mutations & variants. But these numbers, in context, don't need a variant to explain them!
7/N
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Today, my best birthday present is being fully vaccinated! 🎂
But so many still aren't - & the pandemic has wrecked havoc on routine vaccinations too.
Donate to @gavi, @UNICEF or others & I'll match up to $500! Send your receipt to vaccine_donations@protonmail.com & plz RT!
1/
As well as desperately requiring stronger action towards more equitable #COVID19 vaccination, the pandemic has meant so many children weren't able to get basic vaccines.
This could add unnecessarily to the already too-large burden of the pandemic.
The underlying problem isn't that the UK COVID-19 app is 'too sensitive.'
With a quarter-million cases & few restrictions, even if only correct contacts were pinged, that would be a huge number of alerts & isolations!
And yes - that's going to cause a lot of disruption 🤷🏻♀️
1/5
We're papering over the consequences of huge case numbers with debates around sensitivity.
Yes, we can turn sensitivity down - but # of alerts will continue to grow with cases - still potentially annoying people (who uninstall) & certainly continuing to cause disruption.
2/5
This isn't to say we shouldn't try to make pings more accurate, rather, that this isn't an actual solution to high number of pings right now.
Even if 30% pings were bad & we could get perfection now, UK cases rose 33% this week - so we are still at crazy high notifications.
3/5
I've run preliminary @nextstrain focal builds on 20B/S:796H (B.1.1.318) (pictured) & 20A/S:210T (B.1.619).
These aren't part of CoVariants (yet?) but they've caught a couple eyes and I thought it was worth taking a closer look.
1/8
20B/S:796H (B.1.1.318) is behind most of the recent increase in 'other' variants circulating in Greece (shown in grey on the CoVariants plot, below - disregard last point, low sequence #'s).
It's very prominent in Greece, but also found worldwide.
Taking a closer look at Europe only, we can see there's a large cluster in Greece, but also distinct clusters in Switzerland & Ireland, & many sequences from other countries scattered between.
Also - we have awesome new flags on the Per Country page! 🏁🚩
Let's take a closer look...👀
1/10
21G (Lambda) was recently classified a VoI by @WHO & included in @nextstrain builds. It seems to originate in South America - we can see its prevalence in countries like Chile, Argentina, Ecuador, & Peru (purple-pink):
2/10
Looking at the focal build, we can see that 21G (Lambda) has also been found in North America, Europe, the Middle East, and Australia.
Lambda has a unique 7 AA deletion in Spike, & a mutation at S:L452Q.
S:417N has actually popped up multiple times in the Delta variant - it's of interest because it's thought to be related to immune escape & is also found in Beta.
But looking below, there are 2 main clusters - @PangoNetwork lineages AY.2 & AY.1