With a mild Saturday decline to 37578, UK doubling times drop down to 39,5d, just over a month. Hospitalization and mortality trends continue their unending upslope.

In self-inflicted chaos news, the JCVI's recommendation against vaccinating 12-15 year olds - a decision that...
sets them apart from expert groups around the world - has now gotten a rebuke from a member of SAGE, the government's *other* pandemic advisory group. While JCVI portrayed *vaccination* as disrupting schools, Sage's Prof. Edmunds warns COVID will do that:

standard.co.uk/news/uk/covid-…
Johnson looks to plan to push ahead on vaccinations for 12-15yos regardless of the JCVI's statement, but will now face more parliamentary opposition. In a twist, JCVI's Prof. Harden is publicly saying that parents should be given an option to vaccinate:

theguardian.com/world/2021/sep…
What's the latest science on how serious acute infection is in hospitalized children (~1% of child cases)? CDC to the rescue with a new paper:

cdc.gov/mmwr/volumes/7…

Alpha: 26,6% ICU, 6,1% need ventilation, 0,7% fatal
Delta: 23,2% ICU, 9,8% need ventilation, 1,8% fatal
The ventilation and mortality numbers, while higher for Delta, lacked statistical significance due to an insufficient number of cases. In age groups where vaccines were available, there was a 10x greater risk of hospitalization among the unvaccinated.

In adults, the...
... severity difference between variants is very much statistically significant. A new study from Denmark finds a 2,83x higher risk of hospitalization from Delta vs. Alpha

thelancet.com/journals/lanin…

The greatest difference is in young people vs. old (3,26x vs 1,39x) and in ...
unvaccinated people vs. fully vaccinated (3,01x vs. 1,25x)

Back to the news, in keeping with the plans to try to keep deaths below 1k per week, the UK is readying to impose "vaccine passports" on sports, conferences & concerts (facing Tory opposition):

dailymail.co.uk/news/article-9…
Across the ocean, there are anecdotal reports of hospitals in rural Oklahoma being severely backed up by ivermectin poisoning cases, even delaying beds for gunshot victims.

yahoo.com/news/oklahomas…

At the federal level, the debate over boosters is still in flux. The US seems...
to mass-utilize boosters where there's insufficient data on people who've received them - bulk data which at this point only exists for Pfizer. Some are arguing that only Pfizer recipients should get boosters initially, and perhaps only subsets.

nytimes.com/2021/09/03/us/…
Former world champion boxer, 48 year old Oscar de la Hoya, faced a knockout blow from COVID - announcing recently that he's been hospitalized and will be forced to miss his planned comback next weekend.

In research news: Sinovac continues to be terrible, but esp. in old people.

arca.fiocruz.br/bitstream/icic…

Hospitalization protection:
80-89yo: AZ = 91,2%; Sinovac = 67,3%
90+yo: AZ = 70,5%; Sinovac = 35,4%
While loss of smell is a hallmark of COVID, not much attention gets paid to parosmia and phantosmia post-recovery, where smells become altered or hallucinated. A new study parosmia in 47% and phantosmia in 25% of long-term afflicted patients.

medrxiv.org/content/10.110…
Probably not a shock, but SARS-CoV-2 infection - after controlling for risk factors - is a risk factor for worsening kidney function, risk factors for new significant decline in kidney function ranging from 1,25 to 2,96x vs controls.

jasn.asnjournals.org/content/early/…
Backing away from research for a second, in response to video of antivax protesters trying to break into a vaccination centre in the UK:

Lastly - and I should have done this ages ago - but for all of the people who say "Other coronaviruses are colds, therefore SARS-CoV-2 isn't serious": here's the family tree of both Coronaviridae and Picornaviridae (which contains Rhinoviruses, the largest source of colds)
It should be noted that SARS-CoV-2 is on a branch of Coronaviridae that in humans is only associated with severe disease. Picornaviridae shows what a massive grab bag a virus family can be (symptoms, seriousness), with rhinoviruses even closely related to polioviruses.

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More from @enn_nafnlaus

5 Sep
@GidMK I've been ranting against cryptocurrency for quite a while, and I fully agree with every word he says.
@GidMK TL/DR: blockchain is a database that can store any data. Nothing more. But it's distributed between many parties, who you can't trust. So unlike a normal database, you have to go to extreme lengths to try to prove that they're not lying to / cheating on you.
@GidMK With cryptocurrencies, they're using it like a database of VISA transactions of digital coins, and also generating a small number with each transaction processed. You could of course do this with any database, but distributed you must assume everyone might be lying.
Read 16 tweets
5 Sep
A slight Sunday decline in UK cases to 37011 corresponds to a slight drop in the doubling time to 37,8d.

In the UK, the decision to suspend all COVID controls in the House of Parliament has been met with a chorus of condemnation from doctors and medical experts, including...
parental consent will be normally required for children to get vaccinated if the government goes through with their plan to overrule the JCVI recommendations, objecting teens deemed "competent" to make choices will be able to overrule their parents.

Read 11 tweets
3 Sep
With 42076 cases reported today, the UK doubling time drops to 97d, while mortality and hospitalization rates continue upwards.

The big news today is that the JCVI has made the UK the only major country to reject the vaccination of children (in this cases, ages 12-15): ImageImage
gov.uk/government/pub…

Their opinion, which references only three non-peer-reviewed preprints, is full of misleading and outright wrong statements - for example: Image
Anyone should immediately see the problem of using the *whole population* as the denominator rather than the rate per infection (when talking about allowing all children to get infected), but the numbers don't even match their preprints, and are more to the point, impossible. Image
Read 16 tweets
10 Jul
32367 cases on a Saturday brings the centre-averaged doubling time down to slightly to 18 days. UK hospitalizations continue the expected exponential trend.

It's been previously discussed that Delta's effectiveness is by and large not through any clever immune-evasion tricks,...
... but rather largely through simply being a more "fit" virus due a higher binding affinity for ACE2. New research continues to show how fit it is:

virological.org/t/viral-infect…

Over the course of the pandemic, the mean time between exposure and PCR-detectable levels of ...
... virus has fallen from 6 to 4 days. More concerningly however, the detectable levels of the virus were 1260 times (not percent... times) higher at the first detection than early in the pandemic. Delta, quite simply, surges to high viral loads extremely quickly.

Even in our...
Read 10 tweets
9 Jul
35707 UK cases today drops the doubling time down a notch to 22,7 days. Despite 4 of 10 of England's ambulances already being overloaded and on "Black Alert" (something we only know thanks to leaks):



... it does make you wonder whether - had the...
... government not insisted on lifting the brakes on 19 July, whether the continued progress of vaccination would be able to dull this wave before it gets too bad. A 3-week doubling time is a significant improvement, after all.

But I guess we'll never know.
With all but a handful of European countries back into case growth, Germany - one of the more slow-growing European countries - has declared all of Spain a COVID risk area and requires that travelers provide a negative test result to avoid quarantine.

reuters.com/world/europe/g…
Read 15 tweets
8 Jul
Lots going on in the charts today, in this period of calm before the brakes get lifted on the 19th.

The good news first: meagre growth to 32551 cases on a Thurday boosts the doubling time to 26,1 days.

The bad news: the death trend continues to rise further above the... ImageImage
... hospitalization trend, nearly keeping track with the case trend.

We finally got age breakdown data for June, and there is some good news: the growing incidence rate of childhood hospitalizations relative to cases has reversed and is back to winter levels. While it's not...
... clear why this has happened, it's certainly welcome.

Vaccination in June switched to primarily focusing on the 18-54yo cohort, and this can be clearly seen in their declining share of cases in graph 2. The 55+ cohort continued to decline as immunity built, but appears to...
Read 13 tweets

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