COVID Mortalities, Shades of Truth, and Under the Spin (Thread).
We know the raw case mortality rate of COVID in Australia: 1,039 deaths from 61,609 cases = 1.69%.
If we take all COVID deaths to the beginning of June '21, we get 910 deaths from 30,118 cases = 3.03%. /2
It looks like we got better at looking after COVID, right. But we can go further: Vic 2nd wave (804/2,0393=3.94%) vs NSW current wave (126/28,321= 0.44%). Wow - that must mean Labor is shit and Liberals are brilliant. Or vaccines are magic. /3
The problem with all of those raw mortality calculations, except the one embedded entirely in 2020, is that they assume that that a person who dies of COVID immediately they are informed of the diagnosis. Which is obviously a stupid assumption. /4
Despite being a stupid assumption, it is used a lot. The conclusions based on this stupid assumption got so extreme, that NSW Health in their COVID-19 Weekly Surveillance Report Published 30 August 2021, includes a new note - Read the last sentence: /5
So the problem is, that from the time people are diagnosed to the time they die of it, varies, distributed over a period of time, and to get the true mortality rate, we need to wait until they all recover or die. /6
Basically we need to know how far back we need to look at the total case numbers to match up with today's total of mortalities. It won't be perfect, but it will be better than pretending today's cases will never die. /7
NSW Health make their point without applying any correction. But they have a strange choice of central tendency to talk about the problem: Median. If you wrote down the numbers of days to death of each patient from shortest to longest, the Median is the middle number. /8
This is a strange choice, because obviously the numbers can only range down to 0, but may range up to 100's. The distribution is not symmetrical it is skewed by a "left wall effect" You can't have a number of days less than 0, so the shape is probably something like this. /9
In the VIC 2nd wave we did not use the median; we used the mean (what most people intend when they say average): all the lengths of time added together divided by the number of deaths. In the VIC 2nd wave, this was 4 weeks. /10
So if we look at the NSW outbreak, on the 4/9/21 a total of 126 deaths for 28,321 cases gives a raw mortality rate of 0.44%. Corrected using the median time to death by backing up case numbers 111 days, we get 126 deaths for 14,850 cases: 0.85%. /11
But if we use the correction used for the VIC 2nd wave, 28 days, we get 126 deaths for 5,218 cases and 2.41%.
You will notice that most media quote the 0.85% figure but then compare it to the VIC 2nd wave mortality calculated by either actual, total, deaths, or the mean. /12
This is deceptive and creates a false impression that Delta magically both kills quicker, but fewer people; which at face value would be an odd thing. So, until NSW Health publish the actual distribution of times to death, I'll keep using the mean of 28 days as a comparator.
@Peter_Fitz The Vic second wave was almost completely created by outbreaks in federally regulated aged care. The state didn't know, because the cases and deaths were reported to Colbeck, who didn't pass the data on to the state. The coroner alerted the govt to the issue./2
@Peter_Fitz Even once the data were formally requested, it took 3 months to reconcile Colbeck's data against the coroners records. The situation got so bad that the state set up SWAT medical teams to raid aged care facilities, quarantine the staff and transfer the residents to hospitals. /3
@Peter_Fitz Many of the residents were in a terrible state unfed or watered for nearly 24 hours, maggots in bed sores, lying in their own excrement. Many of the swat team members are still being treated for PTSD. And then Morrison called it the "Victorian outbreak". /4
Where are we? - A thread.
A pandemic can be modelled very simply by a modified hunter-prey chaotic system. Lions and rabbits. Rabbits eat grass and multiply if there are few lions, but the more rabbits there are, the more lions can eat them and multiply. /2
Until there are so few rabbits that the lions start to starve and die out, allowing the rabbits to multiply. This system illustrates some remarkable dynamics, with two apparently relative stable positions (very few rabbits or very few lions), /3
and an apparently wildly dynamic state in between with wildly see-sawing numbers of both rabbits and lions in between. The most extraordinary feature of this system is that the outcome of running a scenario depends on the starting values: /4
The COVID setting used in Victoria were devised and periodically revised by scientists. How can we tell? Because each strategy was left in place for long enough for it to be possible to determine if it had significantly improved case numbers. /2
This allowed them to systematically move towards a series of interventions that were effective. The effects of these strategies could be seen by the inflection points in a plot of daily case numbers, generally ~a week after implementation. Much of this work is now published. /3
There is no such precision in changes to NSW case numbers. Settings are changed almost daily, so that although the rate of increase in daily case numbers has changed over time, this has not happened in a way that particular settings can be attributed to any outcome. /4
Here, I would like to propose a #CovidCommission - a multidisciplinary committee to devise and contract the work needed. /2
A significant step forward, would be to develop a preliminary list of perhaps 10 of the sorts of advances that could be commissioned, to determine the sorts of skills needed for a #CovidCommission, and the nature of support that work would need. /3
At this point, what I am seeking is proposed advances in public health, engineering, architecture, humanities, arts - any area of human endeavour that can make living in a world with COVID, not just safe but, a better world. #CovidCommission /4
Prahran Market has just been made aware by the DHHS that a confirmed COVID-positive shopper visited the market on Saturday the 17th of July between 9.40 am and 11.15 am. /2
DHHS advises that the customer visited a number of traders including Pete n Rosie’s Deli, Q le Baker, Prahran Seafoods, John Cester’s Poultry and Game, Gary’s Quality Meats, Reliable Fruit and Veg and Market Lane Coffee. /3
Due to the broad geographic spread of the traders, DHHS has taken the step of classifying the whole of Prahran Market a Tier 1 exposure site. /4
From Saturday Paper (link in thread): Before Sydney’s outbreak of the Delta variant, NSW Health approached Qantas and offered to provide vaccinations for all its staff.
This offer was made not just for those flying internationally or directly connected to border and quarantine operations, but accountants, commercial teams, loyalty program managers and communications staff.
Every back-office employee could be vaccinated, even if aged under 40 – a cohort not yet eligible under national guidelines.