2/ We review what has been learned over the last two years about a simple question: why do about 3% of (#unvaccinated) infected people end up in an ICU with critical C-19 pneumonia when 97% of people control the virus well?
3/ A key conclusion is that inborn errors of, and auto-Abs to type I interferons (IFNs), underlie critical pneumonia in at least 15% of cases, inborn errors being more common < 60 years old and auto-Abs > 70 years old.
4/ These findings further incriminate TLR3-expressing respiratory epithelial cells and TLR7-expressing plasmacytoid dendritic cells, as well as the 13 IFN-alphas and the solitary IFN-omega.
5/ As patients w/ and w/o these determinants are undistinguishable, these findings suggest a general model of critical C-19, w/ insufficient type I IFN in the 1st wk of infection responsible for viral spread and the massive pulmonary and systemic inflammation from the 2nd wk on.
11/ If you are interested in covidhge.com, please contact us, as we are keen to expand and work with new friends! Also, please follow our studies in 2022, as several exciting papers are under peer-review 😊
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1/ In this 2nd @SciImmunology paper (immunology.sciencemag.org/content/6/62/e…), we show pre-existing auto-Abs neutralizing low physiological concentrations of type I IFNs account for 15% of critical COVID-19 cases, including 20% of critical cases in patients >80 yrs and 20% of deaths across ages.
2/ We tested 100-fold lower concentrations of type I IFN than in our previous report (science.sciencemag.org/content/370/65…). We also found that, in most patients, these auto-Abs neutralize IFN-alphas and/or -omega, while other patients carry auto-Abs that neutralize IFN-beta only.
3/ The penetrance for critical COVID-19 pneumonia is high, but depends on the nature of the auto-Abs (e.g. neutralization of both IFN-alphas and -omega versus -omega only), as indicated by the varying odds ratios.
1/ In this first @SciImmunology paper (immunology.sciencemag.org/content/6/62/e…), we show that at least 1% of men younger than 60 years with life-threatening COVID-19 are sick because of X-linked recessive (XR) TLR7 deficiency.
2/ In an unbiased burden test, we found TLR7 as the most significant hit on the X chromosome; with very rare (MAF<10e-4) nonsynonymous variants found in patients with critical COVID-19, but not in patients with asymptomatic/mild infection.
3/ By testing all known TLR7 variants, we found that only 4 of the 8 previously reported TLR7 variants in COVID-19 patients are LOF, and that the cumulative MAF of LOF variants in men in the general population is < 6.5x10e-4.
We report @JExpMed an international survey of SARS-CoV-2-infected APS-1 patients and show that they are at very high risk of life-threatening, critical C-19 pneumonia due to preexisting auto-Abs neutralizing type I IFNs (urldefense.proofpoint.com/v2/url?u=https…)
APS-1 patients typically carry bi-allelic mutations in 𝘈𝘐𝘙𝘌, which controls thymic expression of peripheral antigens, thereby governing central T cell tolerance (science.sciencemag.org/content/298/55…).
We show that neutralizing autoantibodies to type I IFNs underlie a third of the life-threatening adverse reactions to yellow fever virus live-attenuated virus (YFV 17D): rupress.org/jem/article/21…
We also report a patient with YFV 17D disease due to inherited IFNAR2 deficiency, consistent with our previous description of a patient with inherited IFNAR1 deficiency: rupress.org/jem/article/21…
These studies indicate that at least half of the rare but devastating cases of YFV 17D disease are due to inborn errors of type I IFN immunity or their autoimmune phenocopy.
We have been silent for a while because our lab and the CHGE were entirely focused on finishing 'twin papers' in @ScienceMagazine about inborn errors of type I IFN or auto-antibodies to type I IFN in nearly 15% of patients with life-threatening #COVID19 😀 science.sciencemag.org/content/369/65…
Here is the first paper, which shows that variants in only 13 influenza susceptibility candidate genes that govern TLR3- and IRF7-dependent production of type I IFNs account for at least 3.5% of critical cases of #COVID19science.sciencemag.org/content/early/…@ScienceMagazine
Here is the other paper, which shows that neutralizing auto-Abs to type I IFNs account for at least 10% of critical cases of #COVID19, even in a greater proportion in men: an auto-immune phenocopy of the corresponding inborn errors science.sciencemag.org/content/early/…@ScienceMagazine