Raj Rajnarayanan Profile picture
Jul 1 7 tweets 4 min read
Greater than Titan!

Seems like BA.2.75 has the potential to outcompete BA.5*/BA.4* and other circulating BA.2 lineages

Early days but growth advantage will be clear in a couple of weeks.
Growth advantage estimates BA.2.75 vs BA.5*:

cov-spectrum.org/explore/India/…
Growth advantage estimates BA.2.75 vs BA.2.38*:

cov-spectrum.org/explore/India/…
BA.5* vs Ba.2.75 - Mutational Portfolio

Note: A mutation is considered as belonging to a variant if at least 50% of the samples of the variant have the mutation.

No #SGTF for BA.2.75
PANGO issue associated with BA.2.75

Spotted by #Silcn

H/T @siamosolocani @PeacockFlu @mildanalyst

github.com/cov-lineages/p…
BA.1*, BA.5* and BA.2.75* - Mutational Portfolio
"...Maharashtra will not be small counts in reality. Spike mutations also obviously indicative of immune escape"
- @TWenseleers

• • •

Missing some Tweet in this thread? You can try to force a refresh
 

Keep Current with Raj Rajnarayanan

Raj Rajnarayanan Profile picture

Stay in touch and get notified when new unrolls are available from this author!

Read all threads

This Thread may be Removed Anytime!

PDF

Twitter may remove this content at anytime! Save it as PDF for later use!

Try unrolling a thread yourself!

how to unroll video
  1. Follow @ThreadReaderApp to mention us!

  2. From a Twitter thread mention us with a keyword "unroll"
@threadreaderapp unroll

Practice here first or read more on our help page!

More from @RajlabN

Jul 2
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

39.95% BA.2.12.1**,
26.82% BA.5^^,
12.74% BA.4^^,
6.33% BA.2,
5.56% BA.5.1^^,
4.85% unassigned &
0.78% BA.2.9

**S:L452Q; ^^S:L452R/F486V

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 07/01/22 Image
#OmicronVariantUpdates #UnitedStates 07/01/22

Top 5 lineages:
BA.2.12.1, ⬇️ (Spike: L452Q)
BA.5, ⬆️ (Spike: L452R)
BA.4 ⬆️ (Spike: L452R)
BA.2 ⬇️
BA.5.1 ⬆️👀 (Lineage prevalent in #Portugal)

* includes recently designated BA.2.x.y and undesignated BA.2s Image
BA.5*/BA.4* hotspots - #UnitedStates #15DayTrends ImageImageImageImage
Read 12 tweets
Jul 1
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

42.18% BA.2.12.1**,
25.49% BA.5^^,
12.44% BA.4^^,
7.05% BA.2,
5.04% BA.5.1^^,
3.79% unassigned and
0.86% BA.2.9

**S:L452Q; ^^S:L452R/F486V

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 6/30/22
#OmicronVariantUpdates #UnitedStates 06/30/22

Top 5 lineages:
BA.2.12.1, ⬇️ (Spike: L452Q)
BA.5, ⬆️ (Spike: L452R)
BA.4 ↔️ (Spike: L452R)
BA.2 ⬇️
BA.5.1 ⬆️👀 (Lineage prevalent in #Portugal)

* includes recently designated BA.2.x.y and undesignated BA.2s
BA.5*/BA.4* hotspots - #UnitedStates #15DayTrends

All eyes on #NewYork!
Read 12 tweets
Jun 30
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

42.63% BA.2.12.1**,
24.97% BA.5^^,
12.82% BA.4^^,
7.48% BA.2,
5.13% BA.5.1,
2.93% unassigned and
1.04% BA.2.9

**S:L452Q; ^^S:L452R/F486V

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 6/29/22
#OmicronVariantUpdates #UnitedStates 06/29/22

Top 5 lineages:
BA.2.12.1, ⬇️ (Spike: L452Q)
BA.5, ⬆️ (Spike: L452R)
BA.4 ⬆️ (Spike: L452R)
BA.2 ⬇️
BA.5.1 ⬆️👀 (Lineage prevalent in #Portugal)

* includes recently designated BA.2.x.y and undesignated BA.2s
BA.5*/BA.4* hotspots - #UnitedStates #15DayTrends

All eyes on #NewYork!
Read 12 tweets
Jun 29
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

43.89% BA.2.12.1**,
23.48% BA.5^^,
12.63% BA.4^^,
7.82% BA.2,
5.22% BA.5.1^^,
2.54% unassigned and
1.18% BA.2.9

**S:L452Q; ^^S:L452R/F486V

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 6/28/22 Image
#OmicronVariantUpdates #UnitedStates 06/28/22

Top 5 lineages:
BA.2.12.1, ⬇️ (Spike: L452Q)
BA.5, ⬆️ (Spike: L452R)
BA.4 ⬆️ (Spike: L452R)
BA.2 ⬇️
BA.5.1 ⬆️👀 (Lineage prevalent in #Portugal)

* includes recently designated BA.2.x.y and undesignated BA.2s Image
BA.5*/BA.4* hotspots - #UnitedStates #15DayTrends

All eyes on #NewYork! ImageImage
Read 12 tweets
Jun 28
CDC #NOWCAST Variant Proportions Predictions
- #USA (6/25/22)

42% BA.2.12.1 (S:L452Q)⬇️
36.6% BA.5 (S:L452R/F486V) ⬆️ 👀
15.7% BA.4 (S:L452R/F486V)⬆️
5.7% BA.2⬇️

Get #Boosted and #MaskUp

Source: covid.cdc.gov/covid-data-tra

@CDCgov ImageImage
Variant Proportions - a closer look at the top circulating lineages in USA and HHS regions 1-10

BA.2.12.1 has peaked in all the HHS regions reporting

BA.2 has been outcompeted

BA.5 is surging in all HHS regions Image
Read 4 tweets
Jun 28
#COVID19 #VariantDashboard - #Arkansas

>> BA.5 cases (Spike L452R) is the dominant circulating lineage in Arkansas <<

Sequence Count -ALL: 16,577 (+1)
Sequence Count - Omicron: 4531 (+1)
% of SARSCoV2 samples sequenced: 1.92%

public.tableau.com/app/profile/ra…

Updated on 6/27/2022
#COVID19 #VariantDashboard - #Arkansas

Variant Proportions (June 2022):
52.3% BA.5 (Spike L452R)
29.6% BA.2.12.1 (Spike L452Q)
12.5% BA.2
3.4% BA.2.12
2.3% BA.2.18 (Spike K417T)
Read 4 tweets

Did Thread Reader help you today?

Support us! We are indie developers!


This site is made by just two indie developers on a laptop doing marketing, support and development! Read more about the story.

Become a Premium Member ($3/month or $30/year) and get exclusive features!

Become Premium

Don't want to be a Premium member but still want to support us?

Make a small donation by buying us coffee ($5) or help with server cost ($10)

Donate via Paypal

Or Donate anonymously using crypto!

Ethereum

0xfe58350B80634f60Fa6Dc149a72b4DFbc17D341E copy

Bitcoin

3ATGMxNzCUFzxpMCHL5sWSt4DVtS8UqXpi copy

Thank you for your support!

Follow Us on Twitter!

:(