Dr Emma Hodcroft Profile picture
Sep 2 18 tweets 12 min read
Recently I've heard from collaborators in the US & Europe that #Enterovirus #D68 #EVD68 cases are on the rise.

EV-D68 is what I worked on pre-pandemic, & hope to go back to.
A significant autumn 2022 wave has been a recent concern.

So what is D68 & what might this mean?

1/17 From https://syndromictrends.com/ - doesn't break down betwe
#EVD68 is a Picornavirus - a diverse family of viruses. And Enteroviruses are pretty diverse themselves: from Poliovirus, which can cause serious neurological illness, to Rhinovirus - what's behind the common cold 🤧 (and even more in between).

2/17
One of the most notable things about #EVD68 is that in Europe & North America it's historically had biennial autumn outbreaks: in 2014, 2016, & 2018. Also predicted in 2020... but that didn't happen due to pandemic!
Following that pattern, 2022 would be an outbreak season🗓️

3/17
Usually, #EV68 causes mild respiratory symptoms - usually diagnosed in young children - but these can sometimes be more severe.

In the last decade or so, EV-D68 has also been linked to #AFM - acute flaccid myelitis - partial or complete paralysis. Quite concerning.

4/17
I like to say #EVD68 is a virus nobody's heard of - but everyone's had! 🤷🏻‍♀️

We can see antibody titres against D68 go up through childhood (= prev infection), & find them in >98% adults.
In general they seem to be long-lived, but we don't know how complete protection is.

5/17
I can go on a lot more about #Enterovirus #D68 #EVD68 (& I will, in future threads).
But why do we care _now_? With monkeypox & SARS-CoV-2... why am I writing today about this little virus? 🤔

Well - because the pandemic made things a bit weird for all respiratory viruses.

6/17
Particularly in 2020, restrictions to limit #SARSCoV2 (lockdowns, but also closures, masks, awareness, less social activity) _also_ limited all the usual respiratory viruses - including #EVD68

Right up through when we were predicting our next D68 outbreak.

7/17 Data from seattleflu.org/pathogens
That doesn't sound so bad - & it wasn't while those viruses stayed away (though notice how quickly Rhino bounced back 😆). But, this potentially led to many children (& adults?) not getting exposed to #EVD68 when they usually would have been.

8/17
This may mean an 'immunity gap' for #EVD68 - that more children (in particular) are susceptible to #EVD68 than during a 'usual' outbreak, since circulation was considerably lower.

This was outlined really well by Nguyen-Tran et al. thelancet.com/journals/lanmi…

9/17
And why might that matter?

Well, it might mean a much larger outbreak: there are more totally-naïve (perhaps also more not-naïve-but-less-well-protected) individuals present.
This could mean, in particular, extra pressure on hospitals & paediatric units this autumn.

10/17
Further, we don't fully understand whether a delayed 1st exposure may have different symptom presentation/outcome. We haven't seen signs of this previously, but with enough cases, even a slight shift could mean even more hospital pressure, severity, and/or AFM.

11/17
This is another a concrete reminder why we should not get complacent about #SARSCoV2 this autumn either!
Any burden it adds to hospitals isn't helpful for any other "post-pandemic restriction" resurgence we see in other respiratory viruses!

12/17
Of course, we don't yet know how things may pan out in the USA or Europe. But I do think, with the lack of #EVD68 circulation in 2020, 2022 being a predicted outbreak year, & these early reports of a rise -- we should be prepared for an outbreak.

13/17
On my end, I'm hoping to update the #Enterovirus #D68 #EVD68 builds that I maintain at @nextstrain, ready to pull in new sequences as they come.
I'll post links as soon as I can make that happen!

14/17
I also hope to help provide sequencing of #EVD68 samples from here in #Switzerland, thanks to my recent award (see next tweet).
This will help us take a closer look at patterns we see: ages impacted, symptoms, genetic changes & geographical spread!

15/17
You can get the 3-minute-summary of this thread from my presentation for the Johanna Dürmüller-Bol @DBMR_UniBe award in July:



16/17
I'm very grateful to everyone I have had the pleasure to collaborate with so far on #EVD68, & those I hope to in future!
@ENPEN_ESCV @Jan_Albert_ @robert_dyrdak @AppliedMicrobi2 @RametteA @HarvalaHeli @kmess44 Kim Benschop, Maggie Pires Simoes & many more!

17/17
Stay tuned for more #EVD68 threads in the future!

18/17

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More from @firefoxx66

Sep 4
📡#Enterovirus #D68 #EVD68 builds on @nextstrain are now updated 📡

You can check out the VP1 (single-gene) build (nextstrain.org/enterovirus/d6…) & full-genome builds (nextstrain.org/enterovirus/d6…).

I'll give a brief overview of a few things of interest...

1/7 Image
The VP1 #EVD68 build lets us include the most sequences, so I'll focus on that here - though full-genome has many other advantages!

No 2022 seqs yet (got my 👁️peeled!), but there are some from 2021 - from Europe & N America. These stem from the B3 & A2 clades.

2/7 Image
And more specifically, are related to seq clusters that circulated in 2018/2019.

Huge thanks to @HopkinsMedicine @AmaryFaln @NIBSC_MHRA Javier Martin, Alison Tedcastle @UKL_Leipzig Mario Hönemann @CHUDijon Alexis de Rougemont, Isabelle Schuffenecker & more for these seqs!

3/7 Image
Read 7 tweets
Sep 1
"Are we better prepared?" asks @EckerleIsabella as she closes #SSM @SwissMicrobe with her keynote on challenges in prevention & preparedness for emerging viruses.
#SARSCoV2 & #monkeypox have highlighted these issues; what do we know & where do we stand?

1/N Image
Perhaps particularly of note are viruses that aren't entirely new, but keep popping up, or appear in new hosts, new places, or with new symptoms a while after identification. How & how often does this happen?

Others we know well & have fought before, but appear again!

2/N Image
Understanding viral emergence is also not just for viral biologists: there are so many factors that provide influence, from that virus and host to environmental, anthropic, and human-animal interface.

3/N Image
Read 8 tweets
Aug 30
Submitting to @NCBI can be intimidating -- but no more! Getting your #monkeypox sequences up is as simple as following this guide!

Thanks to NCBI & of course to all scientists worldwide contributing to #opendata #openscience
Why is #opendata useful? It's much easier for scientists to share, create tools for, & publicly analyze open sequences.
For example, @Nextstrain creates the #monkeypox builds with open data & provides curated seqs+meta

nextstrain.org/monkeypox/hmpx…

github.com/nextstrain/mon…
@mpxv_lineages uses open data to designate lineages & @GenSpectrum uses open data for the API & website

github.com/mpxv-lineages/…

mpox.genspectrum.org
Read 4 tweets
Aug 26
Our paper on relabelling the internal clades of the #monkeypox to be non-geographical, & proposing a new lineage naming system within Clade IIb, is now out in @PLOSBiology 🙌🏻
This has been an international effort I'm humbled to be part of.

journals.plos.org/plosbiology/ar…

1/8
Because it seems like there's a lot of misunderstanding around this paper/proposal - our paper does *not* touch on renaming the #monkeypox virus itself.
We focus on switching to more structured, non-stigmatizing & standardized naming within the virus phylogeny.

2/8
Contrary to what many people believe, there are long-standing efforts to name new viruses, & re-label old virus-related terms (like clades/lineages/strains), to avoid potentially stigmatizing & often inaccurate names. But previously, you didn't hear of it in the media! 😁

3/8
Read 8 tweets
Aug 12
📣CoVariants.org Update!📣

To help your Friday be fantastic 😎, I'm happy to say that we've updated CoVariants with awesome new graphs that load on-demand, speeding up the browsing experience!

HUGE thanks to @richgoater for implementing! 🎉🙏🏻

1/3
With this new addition, graphs now load dynamically as you scroll, speeding up overall loading time & reducing the overhead (especially on older mobile devices 📱).
Check it out on covariants.org/per-country, or the Per Variant or Cases pages!

2/3
As we try to graph more data from more places over longer times, we're always interested in improving our graphs & website!
If you'd like to help, check out the issues on our Github or reach out with an idea - we love contributions! 🥰

3/3

github.com/hodcroftlab/co…
Read 4 tweets
Aug 5
Monkeypox:
- We've had warnings about it for years
- We have a vaccine
- We have antivirals
- We have experience w poxviruses

Pandemic Preparedness is a buzzword right now, but if we don't seem to be prepared to effectively combat #monkeypox... Is that what we want?

1/
I am not implying that combatting #monkeypox is easy - & the current outbreak has plenty new to figure out (cryptic transmission, new presentation & lesion locations, MSM spread, ABOBEC mutations).

But we've had so much opportunity to be better prepared than we seem to be.

2/
Very few viruses arrive with the headlines they do in movies.
But #monkeypox really did send heralds for years before the current outbreaks. 📣 The waning of smallpox vaccines. The signs of ongoing transmission.

So what should we be doing better?

3/
Read 6 tweets

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