Ilya Shabanov Profile picture
Dec 21, 2022 โ€ข 10 tweets โ€ข 8 min read โ€ข Read on X
Create the perfect digital Lab Notebook ๐Ÿ“’๐Ÿงช๐Ÿงฌ that links to your Reference Manager and Notes!

A Step by Step guide using Obsidian + Calendar Plugin:

โฌ‡๏ธ

#phdlife #phdchat #phdvoice #phdforum #phd #AcademicTwitter #AcademicTwitter Image
1. Install @obsdmd to create your first vault.

If you are in academia and have not worked with Obsidian yet, then your world is changed forever today ๐Ÿ˜ฎ (Check out why, here: buff.ly/3j8bl3d)

Let's move on to creating our lab notebook... Image
@obsdmd 2. Let's install the Calendar Plugin.

- Go to the Obsidian preferences
- Click "Community Plugins"
- Click "Browse"
- Search for "Calendar"
- Install and Enable the plugin ImageImageImage
@obsdmd 3. On your top right you can now access your calendar.

- Each day is simply a note in Obsidian.
- You can create a note for this day by clicking on it - super simple.

Here is a demo:
@obsdmd 4. The calendar will change as you add notes and todos into your daily entries.

Here is what each feature means: Image
@obsdmd 5. Make sure to setup a folder for your daily notes to avoid clutter in your vault

-> Go to preferences and select "Daily Notes" Image
@obsdmd 6. If you want to make weekly notes as well, you have to enable it.

-> Go to preferences and select "Calendar"
-> Check "Show week number"
-> Just like in the previous step, you can set a folder where the weekly notes will go Image
@obsdmd 7. There are many advanced features.

For example you can create tables from your daily notes that all relate to a certain experiment.

Or filter out unchecked TODOs inside those notes...

Too little space to fit that into a tweet ๐Ÿ˜‘ , but... Image
@obsdmd 8. In the next few days I am going to send out a newsletter to my subscribers!

I will go in depth on how to create the perfect lab notebook using the dreaded "dataview" plugin and many more tips on the process.

Please join, if this is relevant to you!

buff.ly/3j8bl3d
@obsdmd There is more!

๐Ÿ™ Follow @Artifexx for more hacks for academics
โ™ป๏ธ Share with your colleagues to help each other
๐ŸŽ„ Happy Holidays!

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More from @Artifexx

Jun 19
Almost done with the slides for this upcoming webinar.

It will be aimed at note-taking and synthesis.

Here is a sneak peak:
๐Ÿ‘‡ Image
Note Taking

Most people take notes in the order they learn about the content.

This is wrong.

Conceptual notes are much more powerful.

Because you don't repeat yourself and use links instead.Image
Academic Note-taking

For academia, special rules apply.

You must protect yourself from plagiarism and always know where you learned what.

This is why you must use a source note template.Image
Image
Read 8 tweets
Jun 18
Everybody uses Google Docs.

But most don't install any of the 100+ extensions.

Unlock hidden features and save time with these 4 must-use extensions: ๐Ÿ‘‡
(I use them for scientific papers)
What are extensions?

Extensions add functionality that Google Docs does not have.

Each extension adds a sidebar where it can be configured and activated.

Google does not develop these extensions but they gain access to your content.

Be aware of privacy issues.
1. Cross Reference

Allows you to generate numbers for figures automatically.

If you rearrange the figures, just click a button and all names and mentions are updated.

Works equally well for tables or equations.

Irreplaceable for academic work.
Read 8 tweets
Jun 12
I thought I would spend days on this lit review.

It took me just 10 minutes (no joke)!

Here is how and what tool I used:
๐Ÿ‘‡Image
My Topic:

I am figuring out how forests react to climate change in New Zealand.

The big question: Who has done it before?
(A vast literature review question that can take hours)

Googling it, I found only a single paper: [Wardle 1992]
Really!?Image
To check if there is really only one paper, I searched for this paper [Wardle 1992] on @LitmapsApp ... Image
Read 11 tweets
Jun 10
Struggling with the discussion section?

Here is an unconventional strategy:

1. Lay out findings from papers on a canvas
2. Link each one to the PDF
3. Group by Topic
4. Summarize what you see as text
5. Flesh out and polish

Let's look at the details:
๐Ÿ‘‡
For this, I am using the @obsdmd Canvas feature. If you are unfamiliar, check out this thread:

1. Lay out the findings of others

Copy quotes from related papers and link to the paper.

(yellow links lead to PDFs, blue links to my note on the paper)

Link them together, here for example are two estimates of a number that are quite far apart - discussion material!Image
Read 10 tweets
Jun 7
Lost in your research?

Create a research map - it's easy.

Here's how to start and find that research gap:
๐Ÿ‘‡Image
1. Use @drawio

A free tool for building research maps.

Drag boxes from the left sidebar.

Customize it with the buttons on the right sidebar.
2. Define what each box means

Each box is an actor that can interact/be connected to others.

Here are some ideas for functional ecologists:Image
Read 10 tweets
Jun 3
Every academic wants to find meaningful research gaps.

โŒ Old way: Read 1000s of papers
โœ… New way: A step-by-step, visual strategy

Here's my workflow using Obsidian, Litmaps, Consensus and DrawIO:
(and a webinar on how to do this!)
๐Ÿ‘‡ Image
1. Start with finding research questions

Sometimes there are papers dedicated to identifying them.
This will make your literature review process ENJOYABLE, as you won't follow ideas that are irrelevant (but inspire you personally).

Here are two examples:
Image
Image
2. Next find key papers on this topic.

One of the fastest and easiest ways to get started, is to use @ConsensusNLP GPT.

Find it in the GPT store or just use their website.

Here I just copy and pasted question 8 from the previous image.

The first hit seems reasonable! Image
Read 13 tweets

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