I am instinctively uneasy about the proposal to delay/skip the second dose of #COVID19 #vaccine. My worry is that the protection will be incomplete and/or wane. Here is some data that speaks to that worry, for the Pfizer/BioNTech vaccine. 🧵

nature.com/articles/s4158…
(With thanks to @StridLab for drawing my attention to it.) 2/
First, I want to note that this data is from BNT162b1. This is the same platform as the vaccine that was approved (BNT162b2) but a shorter mRNA. It was equally immunogenic, but was not taken forward because it was slightly less well tolerated. 3/
That said, the response to BNT162b1 in the absence of a boost – which this paper looked at – will probably give us a good idea about what will happen with BNT162b2 (the approved vaccine). And it’s not promising. 4/
Below, I highlight the 30ug dose with a boost at 21d (the approved schedule) in blue and the dose without a boost in red. 5/
Neutralising antibody titres are hardly higher than pre-vaccination... 6/
CD4+ and CD8+ T cell responses are lower by ELISpot for IFNg... 7/
And RBD-specific CD4+ and CD8+ responses (measured by flow cytometry) are also lower... 8/
To me, this suggests that for this vaccine platform, the single dose strategy is a poor one. Pfizer has put out a statement saying they cannot recommend the single dose strategy. 9/

edition.cnn.com/world/live-new…
For the Oxford/AZ vaccine, there is some evidence to suggest that a delayed boost strategy might work, but it’s confounded by all sorts of other variables. Fuller explanation from @dgurdasani1 here... 10/

So I feel marginally better about the delayed boost strategy for that vaccine, but I am still wary. 11/
I get that we’re in a mess (largely of our own making) but I’m not convinced that stretching limited supplies of vaccine in this way is the way out of it. Particularly for the Pfizer/BioNTech vaccine, partial/waning protection seems likely and could even make things worse. 12/12

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More from @VikiLovesFACS

17 Dec 20
People have been asking me if we might expect the #COVID19 #vaccine to affect female #fertility. The short answer is no. The long answer is... also no, but with more details... 🧵
There are both theoretical and practical reasons to think the COVID19 vaccine will not impact fertility. I’m going to start with the theoretical ones, since the reasons for thinking it might are *also* theoretical. 2/15
The vaccine works by training the immune system to recognise a protein of the virus called “Spike”. Like all proteins, this is made up of a string of amino acids – like beads on a string. The string then gets folded up into a 3D shape so that the protein can do its work. 3/15
Read 16 tweets
15 Dec 20
By popular demand (weirdly!) a thread I wrote a while ago is now an opinion piece in @OUPAcademic Oxford Open Immunology. But I’m here to tell you that now I think what I said in the thread was wrong… 🧵

academic.oup.com/ooim/advance-a…
Back in August, I got involved in a conversation with @notimmuneatall about reproductive immunology, which devolved into a critique of Medawar’s 1953 lecture on “the immunological paradox of pregnancy” 2/

A few people got in touch saying they would like to see the thread developed into something more citeable. But I was only just back on my feet after months of homeschooling by day/science by night, so I thought: no way! 3/
Read 14 tweets
18 Sep 20
#HerdImmunity is a talking point again. So let's talk about it! What conditions do we need to fulfil for a herd immunity strategy to work? And is it possible to do this for #COVID19 #SARSCoV2? 🧵
The idea behind herd immunity is simple. We know infectious diseases spread in a population that is susceptible to them. We also know people can become immune. If enough people are immune, the virus doesn't have enough people to spread to. Then small outbreaks will die out. 2/21
Instinctively, we can feel that the more contagious a disease is, the more people need to be immune to prevent it from spreading. 3/21
Read 23 tweets
21 Aug 20
PhD candidates! Do you ever wonder what your thesis examiners actually *do* to prepare for your viva? Let me tell you what I have been up to for the last couple of days... 🧵

#PhDchat #ECRchat #AcademicChatter
Here is a thesis I’ve just finished reading. Every orange tab is something that I would like to discuss at the viva. The purple tabs are little mistakes we don’t need to discuss, but that the candidate might like to change before final submission (like typos)... 2/15
In practice, we have to prioritise so probably only a third to half of these points will get discussed. My co-examiner will also bring a list of things to discuss and will also not get to discuss every single one. 3/15
Read 15 tweets
3 Aug 20
@notimmuneatall @AcademicChatter @OpenAcademics @mothersinsci @ImperialImmuno @AntoniaCuff Okay, I’ll bite! But first, let’s remember that the (adaptive) immune system as a defence against pathogens predates the evolution of viviparity by some 300 million years. So I’m going for snotty colds too. Now, let’s talk a bit about the immune system in pregnancy... 1/
@notimmuneatall @AcademicChatter @OpenAcademics @mothersinsci @ImperialImmuno @AntoniaCuff This is an area of investigation that has historically been hindered by two things. First, the origin of immunology was in trying to perform skin grafts, so we have often looked at pregnancy through the lens of transplantation, considering the fetus as an organ transplant. 2/
@notimmuneatall @AcademicChatter @OpenAcademics @mothersinsci @ImperialImmuno @AntoniaCuff Second, in humans we have learnt about the immune system by getting cells from the blood. 3/
Read 29 tweets
24 Oct 19
Just finished reading 150 applications for an RA position in my lab (it's a jungle out there). Thought some of you ECRs might like to hear some thoughts from this side of the recruiting story... #ECRchat #PhDchat (a thread)
Most important thing first: read the job description and person specification and tailor your application accordingly. I have to use a shortlisting form based on the JD and PS. No matter how great you look, I cannot shortlist you if you don't show you meet the requirements! 2/
Some applicants I was pretty sure, based on the titles of their MSc projects, that they probably could do (say) cell culture, but is it fair to assume that? Maybe not. And it certainly put those candidates at a disadvantage vs those who explicitly said "I can culture XYZ cell" 3/
Read 16 tweets

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