Updated SARS-CoV-2 new variant report for 2020-01-05 now available at cov-lineages.org/global_report.…. @MOUGK @arambaut @viralverity
We report pangolin assigned 7,160 B.1.1.7 sequences from 26 countries.
And 363 B.1.351 (501-V2) sequences from 5 countries. In addition to countries previously represented by sequences on GISAID, South Korea now reports a B.1.351 (501Y.V2) sequence. @Tuliodna
We have also updated sequence counts and reports for volume of passengers leaving London in October by air, countries refer to passenger final destination. @MOUGK @EvolveDotZoo
In addition to the interactive table, we newly present a map showing reports of new variant cases across the globe. We count a total of 43 countries with reports of B.1.1.7 and 12 countries reporting B.1.351 (501Y.V2). @viralverity @MOUGK

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More from @AineToole

7 Jan
Updated SARS-CoV-2 new variant report for 2020-01-07 now available at cov-lineages.org/global_report.…. @MOUGK @arambaut @viralverity ImageImage
We report 7,979 B.1.1.7 sequences from 28 countries on GISAID, as of today including the Lebanon (1). ImageImageImageImage
We also report 386 B.1.351/ 501Y.V2 sequences on GISAID from 8 countries, including as of today from Botswana (6), France (2) and Sweden (1). @houzhou @Tuliodna @ArnoldTumedi ImageImageImageImage
Read 6 tweets
6 Jan
Latest SARS-CoV-2 new variant report available for 2020-01-06 at cov-lineages.org/global_report.…
@MOUGK @arambaut @viralverity ImageImage
We report 7,348 B.1.1.7 sequences on GISAID from 27 countries as of this morning. In addition to previously represented countries, Oman reports 1 B.1.1.7 sequence. ImageImageImageImage
We report 363 B.1.351 (501Y.V2) sequences on GISAID from 5 countries – no increase from yesterday's report. @Tuliodna ImageImageImageImage
Read 6 tweets
4 Jan
Updated SARS-CoV-2 new variant report for 2020-01-04 available at cov-lineages.org/global_report.….
@arambaut @viralverity @MOUGK
We report that pangolin assigned 5,246 B.1.1.7 sequences from 26 countries. In addition to countries with B.1.1.7 sequences on GISAID previously, Jamaica (4) and Pakistan (2) are now also represented. @viralverity @arambaut
We report 353 B.1.351 sequences from 4 countries (no increase relative to yesterday's report).
Read 7 tweets
3 Jan
Latest SARS-CoV-2 new variant report available at cov-lineages.org/global_report.…. As of today, we have a separate report for B.1.1.7 and B.1.351 lineages. @arambaut @viralverity
We report a total of 4,707 B.1.1.7 sequences from 24 different countries.
And we report 353 B.1.351 sequences from 4 different countries.
Read 6 tweets
2 Jan
Latest SARS-CoV-2 new variant report now available for 2021-01-02. As of this evening, there are 4,697 B.1.1.7 sequences from 23 countries and 353 B.1.351 sequences from 4 countries across the world. @arambaut @viralverity
Todays report — and pangolin v2.1.6 — comes with an updated set of lineage defining SNPs to assign B.1.351, to make use of the SNPs described in this preprint: medrxiv.org/content/10.110…
We now assign B.1.351 to sequences with 5 or more of the defining SNPs. @arambaut @Tuliodna
In addition to countries previously represented on GISAID, New Zealand has uploaded 6 B.1.1.7 genomes.
Read 5 tweets
31 Dec 20
Latest new variant report for 2020-12-31 now online.
pangolin assigned 4,632 B.1.1.7 sequences from 21 countries across the world. In addition to countries previously reported, there are now B.1.1.7 sequences from USA (2), Switzerland (1) and Germany (1).
@arambaut @viralverity
New sequences reported from the UK, Denmark, the Netherlands and India, in addition to the new sequences from the USA, Switzerland and Germany.
The frequency plot shows the proportion of sequences from each country that are lineage B.1.1.7. For countries with low numbers of sequences reported, the frequency is likely not representative of the SARS-CoV-2 circulating in the community.
Read 7 tweets

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