Thread by @nextstrain

Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 11079 new #COVID19 #SARSCoV2 sequences!

You can find the new sequences from Brazil (38) and Chile (71) on nextstrain.org/ncov/south-ame….

(Thanks to @fiocruz, Instituto Adolfo Lutz, @ispch)

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Check out the new sequences from Botswana (4), Burkina Faso (9), Rwanda (79) and Togo (1) on nextstrain.org/ncov/africa.

(Thanks to @BotsHarvard, @CentreMURAZ, @GIGA_ULiege, @transvihmi, @ird_fr, @Inserm)

2/13

Check out the new sequences from Australia (15) on nextstrain.org/ncov/oceania.

(Thanks to #RoyalPrinceAlfredHospital, @NSWHPathology, PHV-FSS, #PathWest Laboratory Medicine, @WAHealth)

3/13

Check out the new sequences from Indonesia (14), Singapore (5), Sri Lanka (3), Thailand (21) and Vietnam (1) on nextstrain.org/ncov/asia.

(Thanks to NIHRD Indonesia @upnjakarta NCID NPHL Singapore, Genelabs Medical @ChulalongkornU @ThaiRedCross @OUCRU_Vietnam)

4/13

New seqs from Albania (29), Belgium (205) and Bosnia and Herzegovina (15) can be seen on nextstrain.org/ncov/europe.

(Thanks to @CovidGenomicsUK @az_delta @OLVZaalst @IPG_Gosselies @JessaZiekenhuis @umons @GroupeJolimont @MedMicroLab_UA LHUB @ULBruxelles Uni of Sarajevo)

5/13

New seqs from Bulgaria (173), Croatia (1), Czech Republic (92) and France (462) shown below.

(Thanks to NCIPD Bulgaria, Croatian Int. of Public Health @CEITEC_Brno @JossetLab @AntoninBal @institutpasteur @CHU_Lille NBACC @IAME_Center @Inserm @Univ_Paris @hopitalbichat)

6/13

New sequences from Ireland (148), Italy (848), Lithuania (210) and Netherlands (19) can be found below.

(Thanks to @nvrlucdireland, Centro AMES, #IZSLER, @INMISpallanzani, IZS dell Abruzzo e Molise G. Caporale, @LSMUNI, Microvida)

7/13

New seqs from Poland (65), Romania (4), Slovakia (24), Spain (18) and Sweden (58) below.

(Thanks to @wsseolsztyn @genXone_SA @UniWarszawski Cantacuzino Inst. Romania @ComeniusUni @IrsiCaixa @hgermanstrias @GTRecerca @vallhebron @VHIR_ @DonostiakoOsp @Folkhalsomynd)

8/13

Check out the new seqs from Germany (1, currently not visible due to random subsampling), Liechtenstein (11) and Switzerland (316) below.

(Thanks to @Hopitaux_unige @unige_en @gcevd @swissgenomics @UniSpitalBasel @AppliedMicrobi2 @tim_roloff @Ulf90 @MBattegay @TheBelsian)

9/13

New sequences from Turkey (162), Ukraine (15) and the United Kingdom (2253) can be found below.

(Thanks to @sagliklicozum, IMBG NASU, @CovidGenomicsUK)

10/13

Check out the new sequences from Mexico (568) and the USA (5121) on nextstrain.org/ncov/north-ame….

(Thanks to @ibt_unam @K_G_Andersen @scrippsresearch @INMEGEN @RespiraINER @CDCgov @ASU @bblarsen1 @MichaelWorobey @TGen @AZDHS @SonoraQuestLabs CPM @ChildrensLA ...)

11/13

USA sequences also thanks to @HealthySCC NBACC @CDPHE @NathanGrubaugh @JosephFauver @YaleSPH @DCDFS @HawaiiDOH @KDHE @CHFSKy @GenomeScience @MDHealthDept @LauringLab @DPHHSMT @NPHLab PSP @IcahnMountSinai @nyugrossman @UNMHSC @unrmed

12/13

USA sequences also thanks to @OHdeptofhealth @scdhec @SDDOH @bswhealth_Templ @TexasDSHS @UtahDepOfHealth @Dr_KFO @ErinYoun @microbemagic1 @UWVirology @UW @kelsey_florek Wyoming Public Health Lab, Cytocheck Laboratory @nyulangone @DDomman @pavitrarc

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