The word ‘endemic’ has become one of the most misused of the pandemic.
An endemic infection is one in which overall rates are static — not rising, not falling. More precisely, it means that the proportion of people who can get sick balances out the ‘Ro’ of the virus. 1/
Assuming a population in which everyone could get sick. Yes, common colds are endemic. So are Lassa fever, malaria and polio. So was smallpox, until vaccines stamped it out. 2/
In other words, a disease can be endemic and both widespread and deadly. Malaria killed more than 600,000 people in 2020. Ten million fell ill with TB that same year and 1.5 million died. 3/
Endemic certainly does not mean that evolution has somehow tamed a pathogen so that life simply returns to ‘normal’. There’s more to global health policy than learning to live with endemic rotavirus, hepatitis C or measles. 4/
Stating that an infection will become endemic says nothing about how long it might take to reach stasis, what the case rates, morbidity levels or death rates will be or, crucially, how much of a population will be susceptible. 5/
Nor does it suggest guaranteed stability: there can still be disruptive waves from endemic infections, as seen with the US measles outbreak in 2019. 6/
The same virus can cause endemic, epidemic or pandemic infections: it depends on the interplay of a population’s behaviour, demographic structure, susceptibility and immunity, plus whether viral variants emerge. 7/
There is a widespread, rosy misconception that viruses evolve over time to become more benign. This is not the case: there is no predestined evolutionary outcome for a virus to become more benign. 8/
Take the case of SARS-CoV-2, in which most transmission happens before the virus causes severe disease. 9/
Much can be done to shift the evolutionary arms race in humanity’s favour.
1-We must set aside lazy optimism.
2-We must be realistic about the likely levels of death, disability and sickness. 10/
3-We must use — globally — the formidable weapons available: effective vaccines, antivirals, diagnostic tests & a better understanding of how to stop an airborne virus through mask wearing, distancing, and air ventilation and filtration. 11/
4-We must invest in vaccines that protect against a broader range of variants.
5-We must ensure a vaccine equity, globally! 12/
Thinking that endemicity is both mild and inevitable is more than wrong, it is dangerous: it sets humanity up for many more years of disease, including unpredictable waves of outbreaks. 13/
It is more productive to consider how bad things could get if we keep giving the virus opportunities to outwit us. Then we might do more to ensure that this does not happen. 14/
How a single amino acid mutation #E406W mediates escape from the REGN10987/REGN10933 antibody cocktail despite residing outside their epitopes 1/
This residue substitution remodels the ACE2-binding site allosterically, thereby dampening receptor recognition severely and altering the epitopes recognized by these mAbs. 2/
mRNA vaccine-elicited neutralizing antibody titers are decreased ~2.5-fold against the E406W mutant, to levels similar to the ones against Delta or Epsilon #SARSCoV2 variants, which is impressive for a single point mutation! 3/
Is #Omicron more likely than #Delta to cause infections in vaccinated persons?
The study found that the positivity rate among unvaccinated persons was higher for Delta (5.2%) than Omicron (4.5%).
They found similar results in persons who received a single vaccine dose 1/
Conversely, the Omicron had higher positivity rates than Delta among those who received two doses within 5 months (Omicron = 4.7% vs. Delta = 2.6%), two doses >5 months ago (4.2% vs. 2.9%), & three vaccine doses (2.2% vs. 0.9%). 2/
Omicron positivity rates in persons receiving one or two vaccine doses were not significantly lower than unvaccinated persons but were 49.7% lower after three doses. 3/
#Omicron features 50 mutations, with 15 mutations in the #RBD of the spike protein, which binds to the human #ACE2 for viral entry. However, it is not completely understood how these mutations alter the interaction and binding strength between the Omicron RBD and ACE2 1/
A new study by adopting a combined steered molecular dynamics (SMD) simulation and experimental microscale thermophoresis (MST) approach tried to quantify the interaction between Omicron RBD & ACE2. 2/
And what did they find?
Omicron brings an enhanced RBD-ACE2 interface through N501Y, Q493K/R, & T478K mutations; the changes further lead to unique interaction patterns, reminiscing the features of previously dominated variants, Alpha (N501Y) & Delta (L452R and T478K). 3/
People are calling #Omicron a natural (live attenuated) vaccine. They say it’s emergence is itself a proof that the virus is receding to a milder form.
And getting Omicron infection is a sure shot way to get protection against all the VOCs!!👇. 1/
But we must remember that, “Every infection is not one step closer to the end, it's one step closer to the next variant.”
The only way to end this cycle is to stop giving it chances to replicate! 2/
Why #Omicron VOC has predilection for upper airways? Why 🫁 are comparatively spared in Omicron infection?
1/
Recent works revealed major changes in the #Omicron biological properties (the impairment of cell surface entry & syncytia formation) compared to earlier VoCs. These major changes could be explained, at least in part, by the mutations #N764K and/or #N856K in S2 subunit.
These mutations were not previously detected in other VoCs. #N764K and #N856K generate two potential cleavage sites for SKI-1/S1P serine protease, known to cleave viral envelope glycoproteins. 3/
This study from #Singapore compares the immune characteristics of 55 patients with vaccine breakthrough #SARSCoV2 infection and 86 uninfected vaccinated close contacts. 1/
Antibody levels, including neutralizing antibodies, were similar in vaccine breakthrough patients and close contacts. 2/
Memory B cell levels, as assessed by B cell ELISpot, were lower in vaccine breakthrough patients than close contacts. 3/