Raj Rajnarayanan Profile picture
Jun 26, 2022 12 tweets 16 min read Read on X
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

47.60% BA.2.12.1**
22.33% BA.5^^
11.44% BA.2,
10.48% BA.4^^
3.61% BA.2.12,
1.08% BA.2.9 and
1.05% BA.2.3

**S:L452Q; ^^S:L452R/F486V

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 06/25/22 Image
#OmicronVariantUpdates #UnitedStates 06/25/22

Top 5 lineages:
BA.2.12.1, ↔️ (Spike: L452Q)
BA.5, ⬆️ (Spike: L452R)
BA.2 ⬇️
BA.4 ⬆️ (Spike: L452R)
BA.2.12

* includes recently designated BA.2.x.y and undesignated BA.2s Image
BA.5/BA.4 hotspots - #UnitedStates #15DayTrends ImageImageImage
#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra… ImageImage
#COVID19 #Hospitalizations in the #UnitedStates (filtered to last 90 days)

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra… Image
#COVID19 #Cases and #Deaths - US States (@CDCgov data)

Tracker: public.tableau.com/app/profile/ra…

#15DayTrends 👇👇👇 Image
Tracking #circulating #variants in New York (#Bellwether state) #15DayTrends

BA.2.12.1 is still the top circulating variant in NY..
BA.5 is surging!

Top circulating lineages:
54.02% BA.2.12.1
23.15% BA.5 <<<
12.13% BA.4 <<<
5.51% BA.2

#MaskUP #NewYork Image
#COVID19 #Hospitalizations in #NewYork

Do not let your guard down! #MaskUP!!

Closely monitoring hospitalizations in #NY!

BA.2.12.1 (L452Q)⬇️
BA.5⬆️
BA.4 ⬆️ Image
Status of #COVID19 wave in #Florida

Looks like BA.2.12.1 wave in FL may have peaked, don't let your guard down!

Get #Boosted and #MaskUP! ImageImage
Status of #COVID19 wave in #Texas ImageImage
Status of #COVID19 in #California ImageImage

• • •

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More from @RajlabN

Jun 22
Tracking #SARSCoV2 #Lineages - Globally |06/21/25

Top lineages -#30DayTrends #G30

NB.1.8.1 (18.8%)
LP.8.1.1 (14.9%)
XFG (13.4%)
XFG.3 (6.2%)
PQ.2 (3.9%)
PY.1 (3.3%)
LF.7.1.3 (2.8%)
XFG.2 (2.3%)
PQ.1 (2.1%)
LP.8.1.6 (1.9%)

Tracker:

1/n public.tableau.com/app/profile/ra…Image
This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 05/22/2025 (3,720 sequences)

Note: Tracker includes ~81K seqs w/ collection dates on or after 01/01/2025 (seqs with significant date errors are not included)

2/n Image
@GISAID Thanks to all the countries that are supporting #SARSCoV2 testing & rapidly submitting sequences to @GISAID

Top submitters #USA #Spain #Australia #UK #India #Canada #Singapore #NewZealand #Kazakhstan #France #China #PuertoRico #Malaysia #Luxembourg #Ireland #HongKong
3/n Image
Read 4 tweets
Jun 16
#COVID19 #VariantDashboard - #USA| 06/15/25

#SARSCoV2 #Lineages #30DAYTRENDS

LP.8.1.1 (22.1%)
NB.1.8.1 (13.6%)👀
XFG.2 (12.9%)👀
XFG (12%)👀
LP.8.1 (3.4%)
LF.7.9.1 (2.5%)
XFJ (2.4%)
LF.7.7.2 (2.3%)
NY.3 (2.3%)
NW.1 (1.7%)

Tracker:

1/n tinyurl.com/mryj4uu7Image
Top #SARSCoV2 #Lineages #30DayTrends after removing #Airport #Surveillance Sequences

LP.8.1.1 (25.9%)
XFG.2 (18%)
NB.1.8.1 (6.9%)
XFG (6.1%)
LP.8.1 (4.7%)

2/n Image
Status of #COVID19 in #NewYork (#Bellwether State)

XFG.2 is the top circulating #SARSCoV2 lineage in NY
others in top 5: LP.8.1.1, XFG, LF.7.7.2, NB.1.8.1

#COVID19 hospitalizations - low | #WasteWater #SARSCoV2 -low | @HealthNYGov

3/n Image
Image
Image
Read 4 tweets
Jun 7
Tracking #SARSCoV2 #Lineages - Globally |06/07/25

Top lineages -#30DayTrends #G30

NB.1.8.1 (21.6%) 👀
LP.8.1.1 (14.5%)
XFG (10.4%)👀
XEC.25.1 (3.1%)
XFG.2 (2.9%)👁️
PC.2 (2.8%)
LF.7.9.1 (2.5%)
PQ.2 (2.4%)👁️
XEC (2%)
PQ.1 (1.9%)

Tracker:

1/n public.tableau.com/app/profile/ra…Image
This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 05/08/2025 (3,370 sequences)

Note: Tracker includes ~70K seqs w/ collection dates on or after 01/01/2025 (seqs with significant date errors are not included)

2/n Image
@GISAID Thanks to all the countries that are supporting #SARSCoV2 testing & rapidly submitting sequences to @GISAID

Top submitters #USA #Singapore #Spain #UK #Australia #Canada #Thailand #NewZealand #India #France #Ireland #Taiwan #HongKong #Pakistan #Bahrain #Cambodia #Japan

3/n Image
Read 6 tweets
May 25
Tracking #SARSCoV2 #Lineages - Globally |05/24/25

Top lineages -#30DayTrends #G30

LP.8.1.1 (17.1%)
NB.1.8.1 (12.6%)👀
PC.2 (6.2%)
XFG (3.9%)👀
XEC.25.1 (3%)
LP.8.1 (2.8%)
XEC (2.6%)
LP.8.1.6 (2.3%)
XFJ (2.3%)
XEC.4 (2.1%)

Tracker:

1/n public.tableau.com/app/profile/ra…Image
This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 04/24/2025 (2,242 sequences)

Note: Tracker includes ~64K seqs w/ collection dates on or after 01/01/2025

2/n Image
@GISAID Thanks to all the countries that are supporting #SARSCoV2 testing & rapidly submitting sequences to
@GISAID

Top submitters #USA #Singapore #Canada #Spain #UK #Australia #NewZealand #Ireland #Japan #Israel #Denmark #Netherlands #SouthKorea #HongKong #Taiwan #China

3/n Image
Read 5 tweets
Apr 13
Tracking #SARSCoV2 #Lineages - Globally |04/12/25

Top lineages -#30DayTrends #G30

LP.8.1.1 (25%)
XEC (14.3%)
LP.8.1 (11.3%)
XEC.4 (6.1%)
LF.7 (4.5%)
MC.10.1 (3.9%)
LF.7.2.1 (3.5%)
XEC.2 (2.5%)
NB.1 (2.3%)
--
XFJ (~0.3%)

Global Tracker:

1/n public.tableau.com/app/profile/ra…Image
This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 03/13/2025 (3,561 sequences)

2/n Image
@GISAID Thanks to all the countries that are supporting #SARSCoV2 testing & rapidly submitting sequences to
@GISAID

Top submitters #USA #Canada #Australia #Singapore #UK #Spain #France #Japan #NewZealand #Denmark #Croatia #SouthKorea #HongKong #Mexico #Norway #Brazil #Taiwan

3/n Image
Read 5 tweets
Jan 6
The Louisiana Department of Health reports the patient who had been hospitalized with the first human case of highly pathogenic avian influenza (HPAI), or H5N1, in Louisiana and the U.S. has died.

katc.com/news/covering-…Image
Note: This is H5N1 Avian Influenza A #WildBird -D1.1 genotype and not #DairyCattle B3.13 genotype related
Read 4 tweets

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