Raj Rajnarayanan Profile picture
Oct 3, 2022 15 tweets 15 min read Read on X
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

23.2% BA.5.2.1
13.5% BA.5.2
10.6% BA.5.1
10.0% BA.4.6
4.0% BF.10
3.3% BA.5.5
2.8% BA.5.6
2.4% BA.5.2.9
2.2% BF.7
2.0% BA.5

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 10/02/22
1/n
Top circulating lineages (#15DayTrends)

83.7%BA.5*
10% BA.4.6*
2.2%BF.7*
1.5%BA.4*
1.2%BA.2.75*
0.5%BQ.1*
0.3%BA.2.3.30*
0.4%BQ.1.1*

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.@CDCgov updated variant proportions estimates on 9/30/2022



3/n
Lineages to watch

BQ.1*/BQ1.1*
BA.2.75.2* ( & CA.1*)
XBB - Recombinant of BJ.1 and BM.1.1.1
BA.2.3.20



4/n
#NorthCarolina, #Massachusetts #California, #NewYork are BA.4.6* (Spike R346T) hotspots

#15DayTrends

5/n Image
Tracking BA.2.75* (#Centaurus) and XBB (#Gryphon) over time in #USA

Closely following several newly designated BA.2.75* sub-lineages

Global Tracker: public.tableau.com/app/profile/ra…

6/n Image
BA.2.75* family of lineages and XBB (recombinant of BJ.1/BM.1.1.1) are highly immune evasive while retaining their host receptor binding affinity!

Their biggest competition will be from BQ* lineages.

Global Tracker: public.tableau.com/app/profile/ra…

7/n Image
Updates from #LineageWatchTeam's @GenSpectrum
#Collection24 maintained by @siamosolocani /
@Asinickle1

>> All eyes on BQ.1*/BQ.1.1*, BA.2.3.20 and BA.2.75* lineages <<

Collection24: cov-spectrum.org/collections/24…

Tracker: public.tableau.com/shared/QFBZWNX…

(#15DayTrends - #USA)

8/n Image
#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…

9/n
#COVID19 #Hospitalizations in the #UnitedStates

Please get #boosted (especially > 50 yr old and immune compromised) and #MaskUP!

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…

10/n
Closely watching #COVID19 #Hospitalizations in > 50 years old in #USA

Get #Boosted ASAP!

11/n Image
Closely watching #Pediatric #COVID19 #Hospitalizations in #USA

12/n Image
#COVID19 #Cases and #Deaths - US States
- @CDCgov data

Tracker: public.tableau.com/app/profile/ra…

13/n
Status of the latest #COVID19 Wave in #NewYork #BellwetherState

Top circulating variants - BA.5.2.1 (21%), BA.5.2 (15%), BA.4.6 (13.3%)

Other key lineages
BF.7 (2.3%)
BQ.1* (1.7%)
BQ.1.1* (0.6%)
BA.2.75.2* (0.6%)

Don't let your guard down!

14/n ImageImage
Status of the latest #COVID19 Wave in #Massachusetts

Top circulating variants - BA.5.2.1 (18.3%), BA.5.2 (16.4%), BA.5.1 (12.8%), BA.4.6 (11.7%)

Other key lineages
BE.1.1* (2.7%)
BF.11 (2.2%)
BQ.1* (0.8%)
BA.2.75.2* (0.5%)

Don't let your guard down!

14/n ImageImage

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More from @RajlabN

Jul 3
#COVID19 #VariantDashboard - #USA| 07/02/25

#SARSCoV2 #Lineages #30DAYTRENDS

XFG.2 (13.5%)
XFG (13.3%)
NB.1.8.1 (11.1%)
LP.8.1.1 (10.1%)
XFG.3 (7.7%)
PQ.2 (3.1%)
PY.1 (1.9%)
NY.13 (1.7%)
NW.1 (1.6%)
NY.15 (1.6%)

Tracker:

1/n tinyurl.com/mryj4uu7Image
Top #SARSCoV2 #Lineages #30DayTrends after removing #Airport #Surveillance Sequences

XFG.2 (19.8%)
LP.8.1.1 (13.3%)
NB.1.8.1 (7.4%)
XFG (6.1%)
XFG.3 (4.9%)

2/n Image
Status of #COVID19 in #NewYork (#Bellwether State)

XFG.2 is the top circulating #SARSCoV2 lineage in NY
others in top 5: XFG, LP.8.1.1, NB.1.8.1, XFG.3

#COVID19 hospitalizations - low | #WasteWater #SARSCoV2 -low | @HealthNYGov

3/n Image
Image
Image
Read 4 tweets
Jun 22
Tracking #SARSCoV2 #Lineages - Globally |06/21/25

Top lineages -#30DayTrends #G30

NB.1.8.1 (18.8%)
LP.8.1.1 (14.9%)
XFG (13.4%)
XFG.3 (6.2%)
PQ.2 (3.9%)
PY.1 (3.3%)
LF.7.1.3 (2.8%)
XFG.2 (2.3%)
PQ.1 (2.1%)
LP.8.1.6 (1.9%)

Tracker:

1/n public.tableau.com/app/profile/ra…Image
This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 05/22/2025 (3,720 sequences)

Note: Tracker includes ~81K seqs w/ collection dates on or after 01/01/2025 (seqs with significant date errors are not included)

2/n Image
@GISAID Thanks to all the countries that are supporting #SARSCoV2 testing & rapidly submitting sequences to @GISAID

Top submitters #USA #Spain #Australia #UK #India #Canada #Singapore #NewZealand #Kazakhstan #France #China #PuertoRico #Malaysia #Luxembourg #Ireland #HongKong
3/n Image
Read 4 tweets
Jun 16
#COVID19 #VariantDashboard - #USA| 06/15/25

#SARSCoV2 #Lineages #30DAYTRENDS

LP.8.1.1 (22.1%)
NB.1.8.1 (13.6%)👀
XFG.2 (12.9%)👀
XFG (12%)👀
LP.8.1 (3.4%)
LF.7.9.1 (2.5%)
XFJ (2.4%)
LF.7.7.2 (2.3%)
NY.3 (2.3%)
NW.1 (1.7%)

Tracker:

1/n tinyurl.com/mryj4uu7Image
Top #SARSCoV2 #Lineages #30DayTrends after removing #Airport #Surveillance Sequences

LP.8.1.1 (25.9%)
XFG.2 (18%)
NB.1.8.1 (6.9%)
XFG (6.1%)
LP.8.1 (4.7%)

2/n Image
Status of #COVID19 in #NewYork (#Bellwether State)

XFG.2 is the top circulating #SARSCoV2 lineage in NY
others in top 5: LP.8.1.1, XFG, LF.7.7.2, NB.1.8.1

#COVID19 hospitalizations - low | #WasteWater #SARSCoV2 -low | @HealthNYGov

3/n Image
Image
Image
Read 4 tweets
Jun 7
Tracking #SARSCoV2 #Lineages - Globally |06/07/25

Top lineages -#30DayTrends #G30

NB.1.8.1 (21.6%) 👀
LP.8.1.1 (14.5%)
XFG (10.4%)👀
XEC.25.1 (3.1%)
XFG.2 (2.9%)👁️
PC.2 (2.8%)
LF.7.9.1 (2.5%)
PQ.2 (2.4%)👁️
XEC (2%)
PQ.1 (1.9%)

Tracker:

1/n public.tableau.com/app/profile/ra…Image
This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 05/08/2025 (3,370 sequences)

Note: Tracker includes ~70K seqs w/ collection dates on or after 01/01/2025 (seqs with significant date errors are not included)

2/n Image
@GISAID Thanks to all the countries that are supporting #SARSCoV2 testing & rapidly submitting sequences to @GISAID

Top submitters #USA #Singapore #Spain #UK #Australia #Canada #Thailand #NewZealand #India #France #Ireland #Taiwan #HongKong #Pakistan #Bahrain #Cambodia #Japan

3/n Image
Read 6 tweets
May 25
Tracking #SARSCoV2 #Lineages - Globally |05/24/25

Top lineages -#30DayTrends #G30

LP.8.1.1 (17.1%)
NB.1.8.1 (12.6%)👀
PC.2 (6.2%)
XFG (3.9%)👀
XEC.25.1 (3%)
LP.8.1 (2.8%)
XEC (2.6%)
LP.8.1.6 (2.3%)
XFJ (2.3%)
XEC.4 (2.1%)

Tracker:

1/n public.tableau.com/app/profile/ra…Image
This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 04/24/2025 (2,242 sequences)

Note: Tracker includes ~64K seqs w/ collection dates on or after 01/01/2025

2/n Image
@GISAID Thanks to all the countries that are supporting #SARSCoV2 testing & rapidly submitting sequences to
@GISAID

Top submitters #USA #Singapore #Canada #Spain #UK #Australia #NewZealand #Ireland #Japan #Israel #Denmark #Netherlands #SouthKorea #HongKong #Taiwan #China

3/n Image
Read 5 tweets
Apr 13
Tracking #SARSCoV2 #Lineages - Globally |04/12/25

Top lineages -#30DayTrends #G30

LP.8.1.1 (25%)
XEC (14.3%)
LP.8.1 (11.3%)
XEC.4 (6.1%)
LF.7 (4.5%)
MC.10.1 (3.9%)
LF.7.2.1 (3.5%)
XEC.2 (2.5%)
NB.1 (2.3%)
--
XFJ (~0.3%)

Global Tracker:

1/n public.tableau.com/app/profile/ra…Image
This analysis includes #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 03/13/2025 (3,561 sequences)

2/n Image
@GISAID Thanks to all the countries that are supporting #SARSCoV2 testing & rapidly submitting sequences to
@GISAID

Top submitters #USA #Canada #Australia #Singapore #UK #Spain #France #Japan #NewZealand #Denmark #Croatia #SouthKorea #HongKong #Mexico #Norway #Brazil #Taiwan

3/n Image
Read 5 tweets

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