Thread by @RajlabN

#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

14.7% BQ.1.1
11.4% BQ.1
10.3% XBB.1.5👀
7.7% BQ.1.22
3.9% XBB.1
2.3% BQ.1.1.3
2.2% BQ.1.2
2.2% BQ.1.3
2.1% BQ.1.12

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 12/23/22
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Sequence count by US State

California and New York have submitted a huge share of sequences with specimen collection dates in the last 15 days.

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Granular details -#VariantDashboard #USA #15DayTrends

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.@CDCgov updated variant proportions estimates on 12/23/2022 (CDC updates nowcast estimates every Friday)

Several BQ* are circulating at >1% & XBB.1.5* are good candidates to be included in CDC's Nowcast estimates next week!



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The Great Convergence!

Tracked #VariantSoup with key #Spike mutations @ 346, 356, 444-446, 450, 452, 460, 486, 490, 493-494 positions

public.tableau.com/app/profile/ra…

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Predicted Immune Escape and ACE2 binding of top lineages in USA (relative to BA.2)

Bivalent boosters (OG/Omicron.BA.5) will potentially protect the boosted from getting severe disease/hospitalizations.

Please get #boosted ASAP!

public.tableau.com/app/profile/ra…

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#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…

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#COVID19 #Hospitalizations in the #UnitedStates

Please get #boosted (especially > 50 yr old and immune compromised) and #MaskUP!

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…

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Status of the latest #COVID19 Wave in #NewYork #BellwetherState

XBB.1.5 is the top circulating lineage in NY

Top Lineages (#15DAYTrends):

XBB.1.5 (29.1%)👀🚀
BQ.1.1 (13.8%)
XBB.1 (9.6%)
BQ.1 (9.2%)
BQ.1.1.3 (2.6%)
BQ.1.1.4 (2.1%)
XBB (2.0%)
XBB.2 (1.8%)

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Rise of highly immune evasive XBB* family of lineages especially XBB.1.5 (Key mutation: Spike F486P) in NY is concerning

fortune.com/well/2022/11/0…

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BQ* Hotspots - #USA #15DayTrends

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Recombinant lineage hotspots - #USA #15DayTrends

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Tracking the current #COVID19 wave, variant soup and #Hospitalizations in #California

BQ.1.22 is the top circulating lineage in CA

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Tracking the current #COVID19 wave, variant soup and #Hospitalizations in #NorthCarolina

BQ.1.1 and BQ.1 are the top circulating lineages in NC

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Tracking the current #COVID19 wave, variant soup and #Hospitalizations in #Maryland

BQ.1.1, BQ.1.22 and BQ.1 are the top circulating lineages in MD

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Tracking the current #COVID19 wave, variant soup and #Hospitalizations in #Michigan

BQ.1.22 is the top circulating lineage in MI

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Tracking the current #COVID19 wave, variant soup and #Hospitalizations in #Texas

BQ.1.1 and BQ.1.22 are the top circulating lineages in TX

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Tracking the current #COVID19 wave, variant soup and #Hospitalizations in #Nebraska

BQ.1.1 is the top circulating lineage in NE

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Tracking the current #COVID19 wave, variant soup and #Hospitalizations in #Arizona

BQ.1.12 is the top circulating lineage in AZ

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Tracking the current #COVID19 wave, variant soup and #Hospitalizations in #Connecticut

XBB.1.5 is the top circulating lineage in CT!

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