#COVID19 #VariantDashboard - #UnitedStates
Holiday season - Low seq count this 15day period!
TOP lineages (#15DAYTRENDS):
24.0% XBB.1.5
11.4% BQ.1.1
9.5% BQ.1.22
9.2% BQ.1
3.6% XBB.1
2.6% BQ.1.1.3
Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 01/03/2023
1/n
Sequence count by US State
New York and California have submitted a large share of sequences with specimen collection dates in the last 15 days.
Appears like a push-pull between BQ.1.1. vs XBB.1.5 as more sequences from outside NE USA are being submitted.
2/n
Granular details -#VariantDashboard #USA #15DayTrends
3/n
.@CDCgov updated variant proportions estimates on 12/30/2022 (updated every Friday)
Several BQ* are circulating at >1% especially BQ.1.1.3/4, BQ.1.22 is a good candidate to be included in CDC's Nowcast estimates next week!
4/n
#Global #VariantSoup 01/03/2023
Top lineages with at least 5 key convergent #Spike mutations (#30DayTrends):
BQ.1.1 (24.27%)
BQ.1 (8.75%)
BQ.1.22 (4.09%)
XBB.1 (3.99%)
XBB.1.5 (2.96%)👀
CH.1.1 (2.91%)👀
BN.1.3 (2.23%)
BQ.1.2 (2.16%)
BQ.1.1.4 (1.98%)
BQ.1.1.20 (1.75%)
5/n
Predicted Immune Escape and ACE2 binding of top lineages in USA (relative to BA.2)
Bivalent boosters (OG/Omicron.BA.5) will potentially protect the boosted from getting severe disease/hospitalizations.
Please get #boosted ASAP!
public.tableau.com/app/profile/ra…
6/n
#Hospital #Capacity - (by State/Division)
All hospitalizations not just COVID-19
public.tableau.com/app/profile/ra…
7/n
#COVID19 #Hospitalizations in the #UnitedStates
Please get #boosted (especially > 50 yr old and immune compromised) and #MaskUP!
Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…
8/n
Status of the latest #COVID19 Wave in #NewYork #BellwetherState
XBB.1.5 is the dominant #SARSCoV2 lineage in NY
Top Lineages (#15DAYTrends):
XBB.1.5 (54.9%)👀🚀
BQ.1.1 (9.8%)⬇️
XBB.1 (6.0%)
BQ.1 (5.2%)
BQ.1.1.4 (2.6%)
BQ.1.1.3 (2.2%)
BQ.1.3 (1.9%)
..
CH.1.1 (1%)
9/n
Rise of highly immune evasive XBB* family of lineages especially XBB.1.5 (Key mutation: Spike F486P) in NY is concerning
fortune.com/well/2022/11/0…
10/n
BQ* Hotspots - #USA #15DayTrends
11/n
Recombinant lineage hotspots - #USA #15DayTrends
12/n
Adding BN* & CH.1.1* (BA.2.75's sub-lineages) to the watch list
13/n
Tracking the current #COVID19 wave, variant soup and #Hospitalizations 👀 in #Massachusetts
2 sequences with sample collection dates in the last 15 days (1 each of XBB.1 & XBB.1.5).
14/n
more on #Massachusetts's XBB.1.5 wave
bostonglobe.com/2022/12/28/met…
15/n
Tracking the current #COVID19 wave, variant soup and #Hospitalizations 👀 in #Connecticut
XBB.1.5 is the top circulating lineage in CT
[low sequence count]
16/n
Tracking the current #COVID19 wave, variant soup and #Hospitalizations in #NewJersey
XBB.1.5 is the top circulating lineage in NJ
[Low sequence count]
17/n
Tracking the current #COVID19 wave, variant soup and #Hospitalizations in #Virginia
BQ.1.1 & XBB.1.5 are the top circulating lineages in VA
[low sequence count]
18/n
Tracking the current #COVID19 wave, variant soup and #Hospitalizations in #Arkansas
Only one sequence with specimen collection dates within the last 15 days is available (BQ.1.22)
[low sequence count]
19/n
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