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11 Jan, 10 tweets, 67 min read
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 15266 new #COVID19 #SARSCoV2 sequences!

Check out the new sequences from Australia (264) on nextstrain.org/ncov/oceania.

(Thanks to @NSWHPathology, @WestSydHealth, @Sydney_Uni, MDU-PHL, VIDRL)

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@GISAID @NSWHPathology @WestSydHealth @Sydney_Uni @transvihmi @ird_fr @Inserm @umontpellier @CerfigGuinee @Alfa_kabi New sequences from India (5), Indonesia (13), Japan (4), Pakistan (36) and Sri Lanka (10) below.

(Thanks to FMR India NIHRD Indonesia National Institute of Infectious Diseases Japan Jamil-ur-Rahman Center Dr. Panjwani Center @usjp @chandi2012 @GMalavige @DinukaaR)

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@GISAID @NSWHPathology @WestSydHealth @Sydney_Uni @transvihmi @ird_fr @Inserm @umontpellier @CerfigGuinee @Alfa_kabi @usjp @chandi2012 @GMalavige @DinukaaR @coophtalninos @CONICETDialoga @intaargentina @CadicUshuaia @UNTDF @intaCIAP @fiocruz @FiocruzAmazonia @INSColombia New sequences from Belgium (5), Czech Republic (25) and Denmark (1573) can be found on nextstrain.org/ncov/europe.

(Thanks to Rega Institute at @KU_Leuven Institute of Applied Biotechnologies State Veterinary Institute Prague @MadsAlbertsen85 @kirk3gaard)

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More from @nextstrain

13 Jan
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 9898 new #COVID19 #SARSCoV2 sequences!

New sequences from Egypt (17) & Tunisia (10) on nextstrain.org/ncov/africa

(Thanks to @mohpegypt, MCL Egypt, @univtunismanar, Ministry of Health Tunisia)

1/11 Image
@GISAID @mohpegypt @univtunismanar Check out the new sequences from Australia (76) and New Zealand (18) on nextstrain.org/ncov/oceania.

(Thanks to @NSWHPathology, @WestSydHealth, @Sydney_Uni, #PathWest Laboratory Medicine, @WAHealth, @ESRNewZealand, @MathStorey, @Joepdl, @sciolato)

2/11 Image
Read 11 tweets
9 Jan
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 4060 new #COVID19 #SARSCoV2 sequences!

Check out the new sequences from Australia (2) on nextstrain.org/ncov/oceania.

(Thanks to @NSWHPathology)

1/6
@GISAID @NSWHPathology You can find the new sequences from Morocco (10), Bangladesh (155), Indonesia (6) and Israel (182) on nextstrain.org/ncov/africa and nextstrain.org/ncov/asia.

(Thanks to @um5rabat, @SolutionDna, @gksavarHQ, NIHRD Indonesia, Israel Central Virology Lab)

2/6
@GISAID @NSWHPathology @um5rabat @SolutionDna @gksavarHQ Check out the new sequences from Argentina (1) and Brazil (34) on nextstrain.org/ncov/south-ame….

(Thanks to @SADI_ORG, @lnccientifica, Instituto Adolfo Lutz)

3/6
Read 6 tweets
7 Jan
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 2963 new #COVID19 #SARSCoV2 sequences!

Check out the new sequences from Australia (105) on nextstrain.org/ncov/oceania.

(Thanks to @NSWHPathology, @WestSydHealth, @Sydney_Uni, @SAHealth)

1/6
@GISAID @NSWHPathology @WestSydHealth @Sydney_Uni @SAHealth You can find the new sequences from Brazil (80), Botswana (6) and Morocco (2) on nextstrain.org/ncov/south-ame… and nextstrain.org/ncov/africa.

(Thanks to @lnccientifica, @BITRI1640, @um5rabat)

2/6
@GISAID @NSWHPathology @WestSydHealth @Sydney_Uni @SAHealth @lnccientifica @BITRI1640 @um5rabat You can see the new sequences from Bangladesh (15), Lebanon (4), Singapore (16) and Thailand (30) below.

(Thanks to @chrfbd @senjutisaha @ChrfSaha @SajibMSI @MalakerRoly @BinZabed @HafizShakil703 @msohag10 @LAUArtsSciences @mysgh NCID NPHL Singapore @thailandnih @pr_moph)

3/6
Read 6 tweets
7 Jan
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 1513 new #COVID19 #SARSCoV2 sequences!

Check out the new sequences from Algeria (14) and Nigeria (2) on nextstrain.org/ncov/africa.

(Thanks to @Pasteur_Algerie @institutpasteur, @NCDCgov)

1/5 Image
@GISAID @Pasteur_Algerie @institutpasteur @NCDCgov You can find the new sequences from Indonesia (17) and Oman (2) on nextstrain.org/ncov/asia.

(Thanks to @eijkman_inst, @KemenristekBRIN, @SQU_Info @microlab_squ)

2/5 Image
Read 5 tweets
4 Jan
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 7236 new #COVID19 #SARSCoV2 sequences!

Check out the new sequences from Rwanda (1) on nextstrain.org/ncov/africa.

(Thanks to @RBCRwanda, @EMukantwali, @UmJeann)

1/11
@GISAID @RBCRwanda @EMukantwali @UmJeann You can find the new sequences from Australia (6) and New Zealand (20) on nextstrain.org/ncov/oceania.

(Thanks to @SAHealth, @ESRNewZealand, @MathStorey, @Joepdl, @sciolato)

2/11
@GISAID @RBCRwanda @EMukantwali @UmJeann @SAHealth @ESRNewZealand @MathStorey @Joepdl @sciolato New sequences from Brazil (20), Chile (8), Trinidad (8) and Uruguay (1) can be found on nextstrain.org/ncov/south-ame….

(Thanks to @imtspusp, @saorafaelbahia, Instituto Adolfo Lutz, @ispch, @CMMUChile, @for_genome, @CVFCarrington, @UWI_StAugustine, @IPMontevideo)

3/11
Read 11 tweets
18 Jun 20
Thanks to fast sequencing & #opendata sharing from Institute of Viral Disease Control & Prevention, China CDC & @GISAID, 3 sequences from the recent #SARSCoV2 #COVID19 Beijing outbreak are now on nextstrain.org/ncov

They fall in clade 20B - frequently observed in Europe

1/6 Image
@GISAID In our global build, the nearest sequences are from the Czech Republic, Taiwan, Greece & Portugal.

However, it's important to remember our builds are downsampled. We can look at the regional builds for different perspectives.

2/6 Image
@GISAID In the Asian build (left) we see same Czech & Taiwan seqs, but also nearby seqs from Denmark, Columbia, Israel, Austria.

In the Europe build (right), we see the Czech & Denmark seqs, but many other sequences from Europe. Some (Portugal, Sweden) are only 1 mutation away

3/6 ImageImage
Read 6 tweets

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