Thread by @nextstrain

Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 9898 new #COVID19 #SARSCoV2 sequences!

New sequences from Egypt (17) & Tunisia (10) on nextstrain.org/ncov/africa

(Thanks to @mohpegypt, MCL Egypt, @univtunismanar, Ministry of Health Tunisia)

1/11

@GISAID @mohpegypt @univtunismanar Check out the new sequences from Australia (76) and New Zealand (18) on nextstrain.org/ncov/oceania.

(Thanks to @NSWHPathology, @WestSydHealth, @Sydney_Uni, #PathWest Laboratory Medicine, @WAHealth, @ESRNewZealand, @MathStorey, @Joepdl, @sciolato)

2/11

@GISAID @mohpegypt @univtunismanar @NSWHPathology @WestSydHealth @Sydney_Uni @WAHealth @ESRNewZealand @MathStorey @Joepdl @sciolato New sequences from Brazil (18), Chile (353), Colombia (19) and Ecuador (1) can be found on nextstrain.org/ncov/south-ame….

(Thanks to @FiocruzAmazonia, @MountSinaiNYC, @uandresbello, @INSColombia, @paulcarald, @BelenPradoV, @juanjogl89, @USFQ_Ecuador, @IMUSFQ, @B_Gutierrez_G)

3/11

@GISAID @mohpegypt @univtunismanar @NSWHPathology @WestSydHealth @Sydney_Uni @WAHealth @ESRNewZealand @MathStorey @Joepdl @sciolato @FiocruzAmazonia @MountSinaiNYC @uandresbello @INSColombia @paulcarald @BelenPradoV @juanjogl89 @USFQ_Ecuador @IMUSFQ @B_Gutierrez_G Check out the new sequences from Bangladesh (9), China (15), & India (17) on nextstrain.org/ncov/asia.

(Thanks to Genomic Research Lab at #BCSIR, Hebei CDC, #virologynimhans, @virology_chitra, @IGIBSocial @CSIR_IND)

4/11

@GISAID @mohpegypt @univtunismanar @NSWHPathology @WestSydHealth @Sydney_Uni @WAHealth @ESRNewZealand @MathStorey @Joepdl @sciolato @FiocruzAmazonia @MountSinaiNYC @uandresbello @INSColombia @paulcarald @BelenPradoV @juanjogl89 @USFQ_Ecuador @IMUSFQ @B_Gutierrez_G @virology_chitra @IGIBSocial @CSIR_IND Seqs from Indonesia (1), Israel (157) and Singapore (49) on nextstrain.org/ncov/asia.

(Thanks to NIHRD Indonesia, Israel Central Virology Lab, Israel National Consortium for SARS-CoV-2 sequencing, NCID NPHL Singapore)

5/11

@GISAID @mohpegypt @univtunismanar @NSWHPathology @WestSydHealth @Sydney_Uni @WAHealth @ESRNewZealand @MathStorey @Joepdl @sciolato @FiocruzAmazonia @MountSinaiNYC @uandresbello @INSColombia @paulcarald @BelenPradoV @juanjogl89 @USFQ_Ecuador @IMUSFQ @B_Gutierrez_G @virology_chitra @IGIBSocial @CSIR_IND Seqs from Belgium (1), Denmark (1182), France (133) & Germany (75) on nextstrain.org/ncov/europe.

(Thanks to @laulam94 @theuns_bas @methenickname @ugent @MadsAlbertsen85 @kirk3gaard @CHUdeToulouse MEPHI @univamu, @rki_de @ChariteBerlin @UniCologne @UniklinikDUS @HHU_de)

6/11

@GISAID @mohpegypt @univtunismanar @NSWHPathology @WestSydHealth @Sydney_Uni @WAHealth @ESRNewZealand @MathStorey @Joepdl @sciolato @FiocruzAmazonia @MountSinaiNYC @uandresbello @INSColombia @paulcarald @BelenPradoV @juanjogl89 @USFQ_Ecuador @IMUSFQ @B_Gutierrez_G @virology_chitra @IGIBSocial @CSIR_IND @laulam94 @theuns_bas @methenickname @ugent @MadsAlbertsen85 @kirk3gaard @CHUdeToulouse @univamu @rki_de @ChariteBerlin @UniCologne @UniklinikDUS @HHU_de New sequences from Greece (6), Italy (104), Lithuania (12) on nextstrain.org/ncov/europe.

(Thanks to @BRFAA_IIBEAA @izpsfg ARGO Laboratorio Genomica ed Epigenomica @INMISpallanzani @LaStatale #IZSVe @VU_LT)

7/11

@GISAID @mohpegypt @univtunismanar @NSWHPathology @WestSydHealth @Sydney_Uni @WAHealth @ESRNewZealand @MathStorey @Joepdl @sciolato @FiocruzAmazonia @MountSinaiNYC @uandresbello @INSColombia @paulcarald @BelenPradoV @juanjogl89 @USFQ_Ecuador @IMUSFQ @B_Gutierrez_G @virology_chitra @IGIBSocial @CSIR_IND @laulam94 @theuns_bas @methenickname @ugent @MadsAlbertsen85 @kirk3gaard @CHUdeToulouse @univamu @rki_de @ChariteBerlin @UniCologne @UniklinikDUS @HHU_de @BRFAA_IIBEAA @izpsfg New sequences from Netherlands (238), Norway (84) and Portugal (55) can be seen on nextstrain.org/ncov/europe.

(Thanks to @rivm @ErasmusMC @MarionKoopmans @ReinaSikkema @1986Bom @Rimo42 @Folkehelseinst @borges__vitor @raqguiomar @GOMES__JP @irj_pt)

8/11

@GISAID @mohpegypt @univtunismanar @NSWHPathology @WestSydHealth @Sydney_Uni @WAHealth @ESRNewZealand @MathStorey @Joepdl @sciolato @FiocruzAmazonia @MountSinaiNYC @uandresbello @INSColombia @paulcarald @BelenPradoV @juanjogl89 @USFQ_Ecuador @IMUSFQ @B_Gutierrez_G @virology_chitra @IGIBSocial @CSIR_IND @laulam94 @theuns_bas @methenickname @ugent @MadsAlbertsen85 @kirk3gaard @CHUdeToulouse @univamu @rki_de @ChariteBerlin @UniCologne @UniklinikDUS @HHU_de @BRFAA_IIBEAA @izpsfg @rivm @ErasmusMC @MarionKoopmans @ReinaSikkema @1986Bom Seqs from Romania (1), Spain (158), Switzerland (488) & United Kingdom (4756) on nextstrain.org/ncov/europe.

(Thanks to INBIMB Romania, Hospital General Univ. Gregorio Marañón, @SaludISCIII SeqCOVID-SPAIN consortium @IBV_CSIC @TanjaStadler_CH @ETH @ETH_BSSE @CovidGenomicsUK)

9/11

@GISAID @mohpegypt @univtunismanar @NSWHPathology @WestSydHealth @Sydney_Uni @WAHealth @ESRNewZealand @MathStorey @Joepdl @sciolato @FiocruzAmazonia @MountSinaiNYC @uandresbello @INSColombia @paulcarald @BelenPradoV @juanjogl89 @USFQ_Ecuador @IMUSFQ @B_Gutierrez_G @virology_chitra @IGIBSocial @CSIR_IND @laulam94 @theuns_bas @methenickname @ugent @MadsAlbertsen85 @kirk3gaard @CHUdeToulouse @univamu @rki_de @ChariteBerlin @UniCologne @UniklinikDUS @HHU_de @BRFAA_IIBEAA @izpsfg @rivm @ErasmusMC @MarionKoopmans @ReinaSikkema @1986Bom @SaludISCIII @IBV_CSIC @TanjaStadler_CH @ETH @ETH_BSSE @CovidGenomicsUK You can see the new sequences from the USA (1845) on nextstrain.org/ncov/north-ame….

(Submitters credited in reply)

10/11

@GISAID @mohpegypt @univtunismanar @NSWHPathology @WestSydHealth @Sydney_Uni @WAHealth @ESRNewZealand @MathStorey @Joepdl @sciolato @FiocruzAmazonia @MountSinaiNYC @uandresbello @INSColombia @paulcarald @BelenPradoV @juanjogl89 @USFQ_Ecuador @IMUSFQ @B_Gutierrez_G @virology_chitra @IGIBSocial @CSIR_IND @laulam94 @theuns_bas @methenickname @ugent @MadsAlbertsen85 @kirk3gaard @CHUdeToulouse USA sequences thanks to @MountSinaiNYC @lapublichealth @QuestDX @NathanGrubaugh @JosephFauver @YaleSPH @HealthyFla @MDHealthDept @mnhealth @HealthNYGov @OHdeptofhealth @CDCgov @UtahDepOfHealth @Dr_KFO @erinYoun @microbemagic1 @kelsey_florek @CDPHE @MHealthFairview

11/11