Thread by @nextstrain

Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 48183 new #COVID19 #SARSCoV2 sequences!

New sequences from Côte d'Ivoire (33) and Kenya (5) can be seen on nextstrain.org/ncov/africa.

(Thanks to CHU Bouaké @KEMRI_Kenya @tagcc_info)

1/20

Check out the new seqs from Angola (71), Nigeria (11) and South Africa (276) on nextstrain.org/ncov/africa. Botswana (1) currently not visible due to random subsampling.

(Thanks to @BotsHarvard @NCDCgov @krisp_news @rjlessells @Tuliodna @EduanWilkinson @nicd_sa @BotsHarvard)

2/20

Check out the new sequences from Australia (34) and French Polynesia (10) on nextstrain.org/ncov/oceania.

(Thanks to #RoyalPrinceAlfredHospital, PHV-FSS, #PathWest Laboratory Medicine, @WAHealth, @JossetLab @Antoninbal)

3/20

New sequences from Aruba (61), Bolivia (1), Bonaire (17), Brazil (68), Curacao (37), Ecuador (6) and Paraguay (15) can be seen on nextstrain.org/ncov/south-ame….

(Thanks to @rivm @UMSAlamejor AFIP Brazil Instituto Adolfo Lutz @uees_ec @fiocruz)

4/20

You can find the new sequences from Canada (538), Costa Rica (16), Dominican Republic (12) & Guadeloupe (2) on nextstrain.org/ncov/north-ame….

(Thanks to @INSPQ @SaM_bioinfo #INCIENSA @NathanGrubaugh @JosephFauver @YaleSPH @institutpasteur)

5/20

Seqs from Mexico (418) & the USA (9763) on nextstrain.org/ncov/north-ame….

(Thanks to INDRE Mexico @langebiomx #LaDEER @OficialCUCS @K_G_Andersen @scrippsresearch @LabMigel @PittTweet @StanfordMed @EmoryCFAR @HealthyLivingMo @NJDeptofHealth @nygenome @Alaska_DHSS @CDCgov @ASU)

6/20

USA seqs also thanks to @ASU @bblarsen1 @MichaelWorobey @TGen @AZDHS @USAFHealth @Dare2BWell @lapublichealth @HealthySCC @K_G_Andersen @scrippsresearch DeRisi Lab @UCSF @NathanGrubaugh @JosephFauver @YaleSPH @DCDFS @delaware_gov @HealthyFla @TGHCares @HawaiiDOH @PKennyLab.

7/20

USA seqs also thanks to @gundersenhealth @IDHW @SIUC @egonozer @NorthwesternMed @KDHE @MiGScenter @LSUHS @LSUHSEVTLab @GenomeScience @MDHealthDept @jacksonlab @r_tewhey @MichiganHHS @mnhealth @UNC_SOM @iskander @NPHLab @NMDOH @unrmed @CGRBOregonState @TexasDSHS @HoustonTX.

8/20

USA seqs also thanks to DCLS at @DGSvirginia @UWVirology @UW Wyoming Public Health Lab @SonoraQuestLabs @MayoClinic @mayocliniclabs @MHealthFairview @UNC_Health_Care @pavitrarc.

9/20

New sequences from Bangladesh (40) and Indonesia (37) can be seen on nextstrain.org/ncov/asia.

(Thanks to @chrfbd @senjutisaha @ChrfSaha @SajibMSI @MalakerRoly @BinZabed @HafizShakil703 @msohag10 West Java Health Laboratory @Unair_Official @itbofficial @sithitb)

10/20

Seqs from India (645), Israel (554) & Kazakhstan (25) below.

(Thanks to @ccmb_csir @ILS_Bhubaneswar @FollowNibmg Israel National Consortium for SARS-CoV-2 sequencing Israel Central Virology Lab RSE National Center for Biotechnology & National Center of Expertise)

11/20

You can find the new sequences from Malaysia (5), Singapore (21), Taiwan (1), Thailand (6) and Vietnam (4) below.

(Thanks to @UNIMASofficial NCID NPHL Singapore @Taiwan_CDC @prmdcu @OUCRU_Vietnam)

12/20

Check out the new sequences from France (570) on nextstrain.org/ncov/europe.

(Thanks to @JossetLab @Antoninbal, @institutpasteur, @CHUdeToulouse)

13/20

You can see the new sequences from Germany (8385) below.

(Thanks to @LRMC_Landstuhl @gagneurlab @USAFHealth @rki_de Bundeswehr Institute of Microbiology @Uniklinik_Fr @HHU_de Epigenetics @Saar_Uni @UniklinikDUS @TU_Muenchen @HelmholtzMunich)

14/20

You can find new sequences from Hungary (1), Ireland (491), Lithuania (81), Netherlands (1674), Norway (40) & Slovakia (76) below.

(Thanks to National Public Health Center, National Biosafety Laboratory, @nvrlucdireland @VU_LT @LSMUNI @rivm @Folkehelseinst @ComeniusUni)

15/20

You can find new sequences from Italy (876) below.

(Thanks to CRGS LMMGe CRMPA Italy @istsupsan Centro AMES @istitutotumori @INMISpallanzani ASST Spedali Civili @BresciaPR S.S. Genetica e Tecniche Omiche Avanzate IZSTO @ATS_Sardegna @unipa_it AOOR Villa Sofia Cervello)

16/20

Seqs from Poland (288), Romania (80) & Russia (165) can be found below.

(Thanks to @JagiellonskiUni @k_pyrc @rabalski @genXone_SA Cantacuzino Institute Romania CRIE Russia WHO National Influenza Centre Russia Pathogenic Microorganisms Variability Lab Russia)

17/20

New sequences from Slovenia (87), Spain (449) and Sweden (1312) can be seen below.

(Thanks to @unilj @hbellvitge @IrsiCaixa @hgermanstrias @GTRecerca @CEIMIHGUGM Cruces University Hospital SeqCOVID-SPAIN consortium @IBV_CSIC @KarolinskaUnsju @Folkhalsomynd @FOIresearch)

18/20

New sequences from Switzerland (1576), Turkey (136) and the United Kingdom (9570) can be found below.

(Thanks to @TanjaStadler_CH @ETH @ETH_BSSE @Hopitaux_unige @unige_en @gcevd @swissgenomics @unil @sagliklicozum @CovidGenomicsUK)

19/20

Seqs from Belgium (1208) below.

(Thanks to @OLVZaalst Imelda Hospital @IPG_Gosselies @JessaZiekenhuis @UCLouvain_be @IREC_UCLouvain @uzgent @GIGA_ULiege @MedMicroLab_UA @UZAnieuws @umons @GroupeJolimont @ZNAwoordvoerder Rega Institute at @KU_Leuven LHUB @ULBruxelles)

20/20