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31 Mar, 14 tweets, 29 min read
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 9739 new #COVID19 #SARSCoV2 sequences!

Check out the new sequences from Australia (14) on nextstrain.org/ncov/oceania.

(Thanks to #RoyalPrinceAlfredHospital, PHV-FSS)

1/14
New sequences from Libya (76), Morocco (2) & Nigeria (1) can be seen on nextstrain.org/ncov/africa.

(Thanks to Genologica Málaga, Laboratoire de Recherche et d'Analyses Medicales de la Gendarmerie Royale, @NCDCgov)

2/14
Seqs from Argentina (769) & Brazil (3) on nextstrain.org/ncov/south-ame….

(Thanks to HRU @CadicUshuaia @UNTDF @intaCIAP Biocódices @gcba @CONICETDialoga @intaargentina LMBA @AcuarioRParana @ProyectoPAIS4, Laboratorio Central Mg. Luis Alfredo Pianciola @MinSaludNeuquen, @fiocruz)

3/14
New sequences from Belgium (205), Bulgaria (366) and Czech Republic (39) can be found on nextstrain.org/ncov/europe.

(Thanks to @az_delta @AZKlina @OLVZaalst @IPG_Gosselies @azsintjan @uzgent HCRC @ugent @ZNAwoordvoerder NCIPD Bulgaria @FNBrno)

4/14
New sequences from France (429), Germany (87) and Ireland (1027) can be seen below.

(Thanks to @JossetLab @Antoninbal @JMPawlotsky @APHP @Inserm @CHU_Lille @cerbaresearch Epigenetics @Saar_Uni @nvrlucdireland)

5/14
New sequences from Italy (139), Lithuania (273) and Netherlands (117) can be found below.

(Thanks to IZS dell Abruzzo e Molise G. Caporale @istitutotumori @Tigem_Telethon #IZSLER Policlinico San Matteo @LSMUNI @VU_LT Hospital Santaros Klinikos @univgroningen @MaastrichtU)

6/14
Seqs from Russia (81), Slovakia (156), Slovenia (502), Spain (106) & Switzerland (45) below.

(Thanks to WHO National Influenza Centre Russia Pathogenic Microorganisms Variability Lab Russia @ComeniusUni @unilj @NLZOH_si @HUCA_Asturias @vallhebron @VHIR_ @CEIMIHGUGM @unil)

8/14
Check out the new sequences from Turkey (94) and Ukraine (2) below.

(Thanks to @sagliklicozum, WHO National Influenza Centre Russia)

9/14
Seqs from Canada (468), Mexico (80) & the USA (2848) on nextstrain.org/ncov/north-ame….

(Thanks to @INSPQ @SaM_bioinfo, INDRE Mexico, @INMEGEN @ASU @bblarsen1 @MichaelWorobey @TGen @AZDHS @ucscgenomics @StateHealthIN Quantigen Biosciences @bushmanlab @jacksonlab @DCDFS)

10/14
USA seqs also thanks to @KATarinambraun @GageKMoreno @tcflab @dho_lab @UBuffalo Wyoming Public Health Lab @SonoraQuestLabs Cytocheck Laboratory @MHealthFairview @MayoClinic @mayocliniclabs @pavitrarc.

12/14
Check out the new sequences from India (14), Indonesia (32), Iran (3) and Pakistan (1) on nextstrain.org/ncov/asia.

(Thanks to @DBTIndia #NIMHANS @ccmb_csir West Java Health Laboratory @itbofficial @sithitb Razi Vaccine and Serum Research Institute, @NIH_Pakistan)

13/14
You can find the new sequences from Uzbekistan (6) & Kazakhstan (10) below.

(Thanks to Centre of Genomics and Bioinformatics (CGB), UzAS Uzbekistan, RSE National Center for Biotechnology & National Center of Expertise)

14/14

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More from @nextstrain

30 Mar
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 11073 new #COVID19 #SARSCoV2 seqs!

New seqs from Australia (16) on nextstrain.org/ncov/oceania.

(Thanks to @NSWHPathology, @WestSydHealth, @Sydney_Uni, #PathWest Lab Med, @WAHealth, #CIDMPH)

1/9
Check out the new sequences from India (99), Indonesia (10) and Pakistan (12) on nextstrain.org/ncov/asia.

(Thanks to @icmr_niv, @DBTIndia, #NIMHANS, @DBT_NCCS_Pune, @ILS_Bhubaneswar, NIHRD Indonesia, @NIH_Pakistan)

2/9
You can find the new sequences from Belgium (834) and Czech Republic (100) on nextstrain.org/ncov/europe.

(Thanks to @az_delta @JessaZiekenhuis @umons @GroupeJolimont Rega Institute at @KU_Leuven @FNBrno Institute of Applied Biotechnologies)

3/9
Read 9 tweets
30 Mar
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 48183 new #COVID19 #SARSCoV2 sequences!

New sequences from Côte d'Ivoire (33) and Kenya (5) can be seen on nextstrain.org/ncov/africa.

(Thanks to CHU Bouaké @KEMRI_Kenya @tagcc_info)

1/20
Check out the new seqs from Angola (71), Nigeria (11) and South Africa (276) on nextstrain.org/ncov/africa. Botswana (1) currently not visible due to random subsampling.

(Thanks to @BotsHarvard @NCDCgov @krisp_news @rjlessells @Tuliodna @EduanWilkinson @nicd_sa @BotsHarvard)

2/20
Check out the new sequences from Australia (34) and French Polynesia (10) on nextstrain.org/ncov/oceania.

(Thanks to #RoyalPrinceAlfredHospital, PHV-FSS, #PathWest Laboratory Medicine, @WAHealth, @JossetLab @Antoninbal)

3/20
Read 20 tweets
24 Mar
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 10924 new #COVID19 #SARSCoV2 sequences!

Check out the new sequences from Indonesia (1) and Singapore (7) on nextstrain.org/ncov/asia.

(Thanks to @upnjakarta, NCID NPHL Singapore)

1/10
New sequences from Botswana (2), Libya (1) and South Africa (4, currently not visible due to random subsampling) can be found on nextstrain.org/ncov/africa.

(Thanks to @BotsHarvard, Genologica Málaga, @nhls_sa, @nicd_sa)

2/10
New sequences from Australia (27) and Papua New Guinea (43) can be seen on nextstrain.org/ncov/oceania.

(Thanks to PHV-FSS, National Public Health Lab & Centre for Infectious Diseases Singapore, Central Public Health Lab Papua New Guinea)

3/10
Read 10 tweets
22 Mar
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 11079 new #COVID19 #SARSCoV2 sequences!

You can find the new sequences from Brazil (38) and Chile (71) on nextstrain.org/ncov/south-ame….

(Thanks to @fiocruz, Instituto Adolfo Lutz, @ispch)

1/13 Image
Check out the new sequences from Botswana (4), Burkina Faso (9), Rwanda (79) and Togo (1) on nextstrain.org/ncov/africa.

(Thanks to @BotsHarvard, @CentreMURAZ, @GIGA_ULiege, @transvihmi, @ird_fr, @Inserm)

2/13 Image
Check out the new sequences from Australia (15) on nextstrain.org/ncov/oceania.

(Thanks to #RoyalPrinceAlfredHospital, @NSWHPathology, PHV-FSS, #PathWest Laboratory Medicine, @WAHealth)

3/13 Image
Read 13 tweets
25 Jan
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 2507 new #COVID19 #SARSCoV2 sequences!

Check out the new seqs from Ghana (13), Brazil (110) and Chile (3) below.

(Thanks to @UHASGhana, @hosp_einstein, Instituto Adolfo Lutz, @uandresbello)

1/7
@GISAID @UHASGhana @hosp_einstein @uandresbello Check out the new sequences from Belarus (25), Belgium (3), Finland (62), France (148) and Germany (93) on nextstrain.org/ncov/europe.

(Thanks to @ChariteBerlin @MedMicroLab_UA @helsinkiuni @TimoSmura @cerbaresearch @institutpasteur @HHU_de)

2/7
@GISAID @UHASGhana @hosp_einstein @uandresbello @ChariteBerlin @MedMicroLab_UA @helsinkiuni @TimoSmura @cerbaresearch @institutpasteur @HHU_de You can find the new sequences from Italy (1, currently not visible due to subsampling), Portugal (99) and Romania (4) below.

(Thanks to Lab. Microbiologia e Virologia Cotugno A.O. dei Colli @borges__vitor @raqguiomar @GOMES__JP @irj_pt Cantacuzino Institute Romania)

3/7
Read 7 tweets

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