Moreno Colaiacovo Profile picture
Apr 5, 2021 16 tweets 10 min read Read on X
THREAD - What happened at the Huanan #seafood market?

The @WHO report is quite clear on this point: #SARSCoV2 might have jumped from a wild animal sold in this market and maybe other markets in #Wuhan. But what do we know exactly? 1/15

#originsofSARSCoV2 Image
After all this time, the Huanan seafood market still remains the main suspect for a simple reason: most of the early cases had visited at least one market in Wuhan city, and several of them visited the Huanan market. 2/15 Image
According to the report, 10,000 people visited this place every day, making it a perfect setting for an #outbreak. One might argue: what about the cases without market exposure? Good question! 3/15
However, if we plot the early cases according to the onset date, we notice that the cases with market exposure peaked earlier than those without it. In other words, the virus appeared first in the markets and then started spreading outside. 4/15 Image
Interestingly, the first case didn't visit the Huanan market, but another supermarket in the Southern part of the city, more than 20 km away from the Huanan market. Due to the high number of cases, though, Huanan got all the attention. 5/15
Unfortunately, once you enter the market, few things make sense. First of all, only 10 out of 678 stalls sold wild (domesticated) #animals: remember this is a #seafood market, and most products were aquatic or seafood. Not ideal hosts for SARS-CoV-2! 6/15 Image
Second, those 10 vendors didn't even sell live #mammals. According to sale records from December 2019, most animals were frozen/dead. Only #crocodiles were sold alive, while live #snakes and #salamanders were slaughtered before being sold. 7/15 Image
The @WHO team even interviewed two local residents who had been visiting the market for 20-30 years: they never witnessed any live animal being sold. But old photographs and media reports suggest the opposite, so.. Who knows! 8/15 Image
Anyway, Chinese scientists tested several animals or parts of animals in the market area. Some species are now known to be susceptible to SARS2 infection (#rabbits, #cats, #badgers), but unfortunately no sample tested positive. 9/15 Image
They did find some positive samples though: not animal, but #environmental samples (surfaces, sewage, etc). Interestingly, the highest % of positive samples were found in stalls selling #vegetables and #poultry (which can't be infected). 10/15 Image
Ok, but what about the early cases? 30 of them were vendors at the Huanan market, but none of them sold domesticated animals: in fact, the highest % of positive cases were among people selling #vegetables. Weird! 11/15 Image
Also checking the very first cases in the market did not help. This market is a brain teaser! 12/15 Image
Let's recap: no live mammal was officially sold, no vendor selling wildlife products tested positive and only one environmental sample tested positive in their stalls. So where did SARS2 come from? 13/15 Image
Nobody really knows. However, the @WHO experts think there are interesting clues: some of the #wildlife vendors sold animal products coming from farms in Southern China, where SARS-CoV-2 closest relatives were found. 14/15
Scientists hope that sampling more animals among the market suppliers will finally reveal the source of SARS-CoV-2. Easier said than done: more than 80,000 samples from livestock, poultry and wild animals across China have already been tested. All negative! 15/15
Please correct me if I made any mistake! @Peterfoodsafety @MarionKoopmans @TheaKFischer @hung_cenpher

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More from @emmecola

Jul 23, 2023
It took me some time to read all the Slack conversations between the #ProximalOrigin authors (not just the cheery-picked quotes), but it was a useful exercise.

It showed in real time how their thinking evolved with new evidence, as the authors themselves have been saying. 1/
So now I have no doubt that they did change their mind because of new information, i.e. #pangolin CoVs with similar RBD and bat virus with putative insertions in the FCS spot.

Of course one could wonder if their assessments were correct, but that's a separate issue. 2/
The only thing I still don't understand is: why did they add that word "plausible" in the final version (4th March)?

That statement was very strong, but did not correspond to their level of confidence, as far as I could see from their exchanges. 3/
Read 6 tweets
Apr 11, 2023
"The proximal origin of SARS-CoV-2" will probably be one of the most debated and criticized papers of all times. @edwardcholmes has shared the responses to the reviewers, which is interesting especially because some critics said it wasn't peer reviewed. 1/
documentcloud.org/documents/2373…
Reviewer #1 would like to know the authors' view on the possibility of a lab leak of a natural virus. Their response clarifies why they believed no lab scenario was plausible: the opportunities for animal-to-human spillovers are more frequent. 2/ Image
As it often happens, Reviewer #2 has more criticisms to raise, but not in the direction we might have expected. He almost seems to believe that a lab origin for SARS2 is so absurd that writing a manuscript about it is a useless exercise. 2/
Read 9 tweets
Oct 22, 2022
Ok guys, for me the #OriginOfCovid debate has come to an end. After I changed my mind on the most probable origin, Twitter interactions have become more difficult for me. 1/
When I was on the lab leak side it was much easier. The zoonosis proponents have never insulted me, the worse thing they did to me was blocking me. But in the last few months, debating this topic on Twitter has become less and less pleasant. 2/
I have been called dumb and biased. My words have been twisted, screenshots have been taken and posted to ridicule me. Now, someone has even posted a thread claiming that I am a CCP tool. 3/
Read 6 tweets
Oct 22, 2022
As I always do, I tried to keep an open mind about this recent preprint. I also invited people to avoid insults and read the paper before criticizing it.

I read several technical comments from experts, and unfortunately it didn't end well for the authors. 1/
This is the most obvious mistake, which IMO invalidates the conclusion of the paper. The restriction enzymes that have been analysed cut outside their recognition site, which means that cloning strategies using them remove the sites in the final product 2/
See for example this figure from a WIV paper (Hu et al, 2017). Once you cut the sequences where the red lines are, and ligate the fragments in the correct other.. the red letters are gone. In other words, if they used these enzymes, you wouldn't see the sites in the genome. 3/
Read 6 tweets
Oct 21, 2022
I share this preprint to encourage all virologists, bioinformaticians and molecular biologists to address it and search for flaws. I know emotions run high, but please try to be civil and express your criticisms as clearly as possible for the general public. 1/

#OriginOfCovid
I will post the most interesting responses that I found on Twitter, and update the thread whenever new comments are posted. Here's @BallouxFrancois endorsement. 2/
On the opposite side, this is @K_G_Andersen who loses his temper and points out the omission of SARS2 relatives from the analysis. 3/
Read 8 tweets
Aug 19, 2022
C'è molta curiosità intorno a @PossibileIt e al suo programma per le #Elezioni2022, ma siccome molti sono intimoriti dal file PDF di 95 pagine ho deciso di raccogliere in questo thread i punti principali. 1/

#PossibileItalia

possibile.com/possibile-ital…
CLIMA

➡️ 10 GW di #EnergiaRinnovabile installati ogni anno (siamo fermi a 0.85/anno) ☀️
➡️ Manutenzione straordinaria della rete idrica 💧
➡️ Stop al consumo di suolo, più alberi nelle città 🌳
➡️ Investimenti su trasporto pubblico, ciclabili e mobilità elettrica 🚲

2/
LAVORO

➡️ #SalarioMinimo (inizialmente di 8,50 €/ora). I minimi tabellari dei CCNL prevalgono se superiori. 💶
➡️ Stop ai tirocini, rafforzamento apprendistato 👨🏻‍🔧
➡️ Tutela dello #SmartWorking 👩‍💻
➡️ Più ispezioni e ispettori, per garantire sicurezza e recupero evasione 💸

3/
Read 17 tweets

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