I'm pleased to announce that my analysis of Israeli Covid data is published as a preprint. It's about vaccine effectiveness (VE) for infection. It assesses whether infection is more likely in unvaccinated people than in fully vaccinated people: zenodo.org/record/5527285…
🧵
1/16
So what is vaccine effectiveness (VE)?
VE looks at the ratio of events in fully vaccinated (FV) individuals as percentage of the population at risk in that group (i.e. total No. of fully vaccinated people) to the same in unvaccinated (UV) people.
2/16
Suppose there are 10 events in a total of 100 FV people and there are 40 events in a total of 50 UV people, then VE is (100% x (1-(10/100)/(40/50)=) 87.5%. In this example the percentage of events in FV is much lower than the percentage in UV, thus VE is high.
3/16
Events can mean several things, such as infections (i.e. positive tests), hospitalization, or death. I assessed all of these.
When VE drops to 0%, the percentage of events in both groups is equal. In other words, if VE is 0% FV are equally likely to have an event as UV.
4/16
Thus, if VE for infections is 0%, fully vaccinated individuals are equally likely to test positive as unvaccinated persons. This would be evidence against a policy to test unvaccinated but not fully vaccinated people for e.g. e corona passport.
5/16
Why is this important? Because previous evidence only showed that fully vaccinated have a similar viral load as unvaccinated *if* they are infected. It is often argued that the risk of getting infected in the first place is lower. But is it?
6/16
In my analysis I've looked at Israeli data from 20 December 2020 till 4 September 2021 per age group (0-19, 20-29, ... ,80-89, 90+) per week. Data is available for vaccination, positive tests, hospitalization, and death. The latter 3 are stratified for vaccination status.
7/16
The data shows that in the first months, until mid-June 2021, the VE for infection is >90% in all age groups. After that, it rapidly drops in many age groups, in particular for 20-69. Other age groups start to decline a little later.
8/16
Now, what has happened in June 2021? The Delta variant happened.
The Delta rapidly spread and if you look at the percentage of the total population in each age group (both FV and UV), it increased exponentially *at an equal rate* in each group.
9/16
This is striking, because vaccination coverage in the various age groups is not the same. Yet, the infections are equally distributed among the complete Israeli population.
While VE was negative for some age groups in 2nd half of June, this is numerical noise. But...
10/16
...from mid-July until mid-August 2021 there were high numbers of positive tests in each age group. In that period, VE for infection in most age groups was around 0%. So FV tested positive equally often as UV.
11/16
The VE for infection started to increase after mid-August. Why? Apparently because of the booster doses. These were provided in the oldest age groups first, and the percentage of positive tests started lowering in the same order.
12/16
Although the VE for hospitalization and death did show some drop, they remained high throughout the entire period.
13/16
So, it can be concluded that after approximately 6 months, the VE for infection drops and fully vaccinated tested positive equally often as unvaccinated. This does not seem to be due to the Delta but to time: the booster (same as first doses) helped to increase VE again.
14/16
Together with the evidence that the viral load in breakthrough infections in fully vaccinated is as high as in first infections of unvaccinated people, this evidence shows that testing unvaccinated but not fully vaccinated is a policy not backed by evidence.
15/16
I invite everyone to read the full text and I welcome all substantiated comments. zenodo.org/record/5527285…
I also encourage all countries to make available the Covid data as complete as Israel does. This helps to gain understanding and stimulates open science.
16/16
BONUS: because I am not a virologist, I did not include any speculation about what may cause this in the manuscript. I do want to make a suggestion here. It is known that antibodies (ABs) are waning after ~6m, but memory cells are not. It seems to make sense that when ABs....
... disappear, fully vaccinated become susceptible to infection and the virus is not immediately cleared. Hence, the virus can replicate and people become infectious. However, because memory cells are doing their thing, they are less likely to get severely ill. With a booster...
...the antibodies are (temporarily) boosted as well and the virus can again be rapidly cleared. So, after the booster dose the VE for infection goes up again. The question is how long lasting this will be and there simply is no data to answer this.
• • •
Missing some Tweet in this thread? You can try to
force a refresh
Een toekomstvisie. Hoe zouden de komende jaren met covid eruit kunnen zien*?
Een draadje. 🧵
Eerst de spelers: 1. Het kabinet, m.n. Rutte en De Jonge 2. Het OMT en RIVM 3. De tweede kamer 4. De media 5. Critici 6. Extremici
*Spoiler: deze verwachting is niet erg positief
1/
Ten tweede de maatregelen waar discussie over was/is: 1. Scholen dicht 2. Avondklok 3. Mondkapjesverplichting 4. Lockdown: horeca en niet-essentiële winkels dicht 5. Vaccinatie als dé uitweg 6. Testen voor toegang 7. Vaccinatiedrang
... etc.
2/
In de afgelopen anderhalf jaar was de gang van zaken (a) dat er iets voorviel, (b) het kabinet een advies vroeg aan het OMT, (c) RIVM een voorstel voor een advies en vergaderagenda opstelde, (d) het OMT haar input gaf, (e) het kabinet werd ingelicht, (f) het kabinet...
3/
De grote stijging in het percentage positieve testen is m.i. deels een werkelijke toename, maar ook deels een artefact van het testbeleid.
In week 25 werden er in de groep 18-24j 13733 nieuwe aanmeldingen getest, waarvan 5.5% positief (755). Dat leidde tot 1583 testen....
1/
...ihkv bron en contactonderzoek, waarvan. 9.9% positief (157). In totaal dus 912 positieve testen in deze groep.
Vorige week (week 26) nam testen voor toegang een enorme vlucht. Ineens van 133k naar 303k testen, waarvan 643 positief. Het aantal door de GGD afgenomen...
2/
...non-BCO testen in deze leeftijdsgroep verdubbelde naar 26636, waarvan 8.5% positief (2264). Ook bron en contactonderzoek in deze groep nam toe, verdrievoudigde, naar 4594, waarvan 21.8% positief (565). Totaal dus 2829.
Cruciale vraag is waardoor het aantal testen...
3/
De argumenten die hier gegeven worden om kinderen tussen 12 en 18 te vaccineren, zijn mijn inziens werkelijk te bizar voor woorden. Het heeft niets te maken met een medische behandeling.
Hier komt de eerste:
"De vaccinatie van tieners is ook in het belang van henzelf, betogen nu de kinderartsen. ‘Ook voor tieners is het niet goed als de maatschappij straks in de herfst weer in een halve lockdown belandt’"
Hangt een lockdown af van vaccinatie van tieners?
2/6
En dan deze:
"‘We willen niet dat de tieners tussen de 12 en 18 jaar straks tweederangsburgers worden. Ga maar na: als je onder de 12 bent, ben je in principe gevrijwaard van testen voor evenementen of het buitenland. Als je 18 jaar of ouder bent, kun je je...."
3/6
1) Er is besloten dat het OMT met één stem moet praten. Meningsverschillen mogen zelfs niet naar buiten komen. Is dat verstandig? Dit levert de politiek geen totaalplaatje op, noch inzichten in de mitsen en maaren. Het leidt tot keuzes, terwijl keuzes politiek zijn.
2/4
2) Door de opstelling van het kabinet komt er teveel verantwoordelijkheid bij het OMT te liggen. Rutte et al leunt op het OMT en steekt dat niet onder stoelen of banken. Tegelijkertijd maken de politici keuzes én voeren druk uit in bepaalde richtingen.
3/4
Idd deed Kuipers op 14okt een voorspelling vh aantal bezette ZH-bedden (exc IC) obv verschillende R-getallen. Ik heb de data van 't dashboard er even onder gezet.
➡️Er is een grote mismatch sinds 3nov!
Of geschatte R klopt niet, of het model, of beiden.
Het geschatte R-getal zwerft al tijden rond de 1.
-Op 6okt was ie 1.1
-Op 19 okt kwam ie onder de 1
-Dal was 0.82 op 27okt.
-Op 3nov (piek bezette bedden) was ie 0.9.
-Meest recent (13nov) is ie 1.04.
2/8
Kuipers voorspelde bij R van 0.9 de onderste oranje lijn. Die zou vandaag pas piek bereiken op ca. 2500.
-De realiteit is dat het aantal bezette bedden sinds 3nov continu daalt, ondanks geschatte R rond 1.
-Aantal bezette bedden is nu minder dan helft (!) vd voorspelling.
3/8
In the reductionistic approach that dominates science, we've tried to categorize even our own physiology into sperate systems such as the immune system or the metabolic system. A number of beautiful papers show that things are not so segmented as we might think. A thread.
1/
Already almost a decade ago, a brilliant paper in Nature showed that there is crosstalk between the gut microbiome, gut epithelial cells, and immune cells. Moreover, it showed that epithelial cells can take over the immune cell function. ncbi.nlm.nih.gov/pmc/articles/P…
2/
Than there is this work of art: nature.com/articles/natur…
The author argues that the immune and metabolic system are likely coevolved and demonstrates that cytokines in fact also act as metabolic hormones. This explains the low-grade inflammation associated with e.g. diabetes.
3/