#SARS2 can cause acute respiratory distress & death in some patients. Although severe #COVID19 disease is linked to exuberant inflammation, how #SARS2 triggers inflammation is not understood. 1/
Monocytes & macrophages are the key sentinel cells that sense invasive infection to form inflammasomes that activate inflammatory cascade by secreting caspase-1 and gasdermin D, leading to inflammatory death (pyroptosis) & release of potent inflammatory mediators. 2/
~6% of monocytes in COVID patients are infected w/ SARS2
Monocyte infection depends on uptake of Ab-opsonized virus by Fcγ receptors
SARS2 begins to replicate in monocytes, but infection is aborted & infectious virus is not detected in infected monocyte culture supernatants. 3/
Instead, infected cells undergo inflammatory cell death (pyroptosis) mediated by activation of NLRP3 & AIM2 inflammasomes, caspase-1 & GSDMD
Tissue-resident macrophages, but not infected epithelial & endothelial cells, from COVID lung autopsies have activated inflammasomes. 4/
These findings suggest that antibody-mediated SARS2 uptake by monocytes/macrophages triggers inflammatory cell death that aborts production of infectious virus but causes systemic inflammation that contributes to COVID19 pathogenesis. 5/
Welcome sublineages of BA.2: (sublineages mean stuff clearly derived from known omicrons (BA.2 or BA.1.1. or whatever)
⚠️ BA.4 & BA.5 just got designated
➡️ BA.4 (S:L452R+486V +N:151S + orf9b:11F)
➡️ BA.5 (S:L452R+486V +M:D3N)
So BA.4 & BA.5 would be new omicrons! 1/
➡️ BA.* sublineages with S:L452R and S:F486V (79 sequences as of 2022-04-05, mainly South Africa)
➡️ Mutations on top of BA.2:
S: L452R, F486V
ORF7b: L11F*
N: P151S*
nuc: G12160A
*these two don't always seem to be picked up, G12160A is a better marker outside the spike 2/
➡️ Notably, 452 and 486 are two of the biggest antigenic sites that are not already hit by BA.2 mutations; 452R might knock out some of the same antibodies that 446S does in BA.1. 3/
➡️ Israeli MoH data, 1,252,331 persons 60 y/o or above, Study period: Jan 10-March 2, 2022
1/
➡️ Rate of confirmed infection & severe Covid as a function of time:
-Four-dose groups (8 days after receipt of a 4th dose)
-Three dose group: among persons who had received only 3 doses
-Internal control group: among persons who had received a 4th dose 3 to 7 days earlier 2/
➡️ Number of cases of *severe* Covid19 per 100,000 person-days:
-1.5 in four-dose groups,
-3.9 in the three-dose group,
-4.2 in the internal control group
Characterisation of a new recombinant, #XD (a Delta-Omicron recombinant)
➡️ The XD is a chimeric SARS2 virus having recombination of Delta AY.4 & Omicron BA.1.
➡️ The XD spike carries a larger fraction of the signature changes of BA.1, including the entirety of the RBD
1/
There are two breakpoints, one at the beginning of spike & one within ORF 3a
➡️ Immune escape:
-With pseudovirus, only a small reduction in NAb titers ag #Delta compared to WT
-In contrast, both XD & BA.1 were barely neutralized by sera sampled 1 or 6 mo after 2 doses
2/
-The titers were all much higher 1 month after a 3rd immunization, although they displayed an 8-fold to 10-fold reduction in neutralization efficacy against both BA.1 and XD compared to the WT virus.
3/
Am I taking a break from pandemic-related news? Is the pandemic over? No, then why in the midst of the pandemic, I’m doing this long thread on something different? Will disclose the reason in the end.....but I think this fascinating tale needed to be told to my twitter family 1/
Most of my close associates are aware of this saga. But most of the Twitterati are oblivious of this journey. It all started in the autumn of 1998 when I got two young kids with a weird behaviour—combative & agitated, chewing their body parts along w/ fever, vomiting, stupor.. 2/
Clinically and even after performing basic investigations, their clinical profile was not fitting in a proper known clinical entity. It was not encephalitis, not hepatic coma, nor another known multi-system disease. And this was not a stray incident. 3/
Limited differences between the intrinsic generation time of the #Omicron variant as compared to previous estimates on ancestral lineages, #Alpha and #Delta. Like for previous lineages, pre-symptomatic transmission appears to play a key role for Omicron transmission. 1/
The result that the intrinsic generation time of the #Omicron is not significantly shorter than previous lineages may be surprising w/ respect to the intuition suggested by repeated observations of shorter incubation periods & serial intervals 2/
Realized serial intervals are a biased proxy for generation time since they depend strongly on epidemiological conditions of study population; in particular, they tend to be shorter when transmissibility is higher (as Omicron) & thus the competition for susceptible is stronger 3/
Boosting with variant-matched or historical #mRNA vaccines protects against #Omicron infection in mice
➡️ Researchers evaluated in mice the protective efficacy of the #Moderna mRNA-1273 vaccine against BA.1 before or after boosting. 1/
Whereas 2 doses of mRNA-1273 vaccine induced high levels of neutralizing antibodies against WA1/2020 strains, lower levels against BA.1 were associated with breakthrough infection & inflammation in the lung. 2/
A primary vaccination series with mRNA-1273.529, an Omicron-matched vaccine, potently neutralized BA.1 but inhibited historical or other SARS2 variants less effectively. 3/