Mia Malan Profile picture
May 18 18 tweets 11 min read
🧵1. It used to be straightforward to determine when we were in a #COVIDinSA wave. Everyone used the ministerial advisory committee’s formula. In 2022, things are a bit more complicated. Some researchers argue this method is no longer all that useful. bit.ly/3wkRRwv
2. If we use the MAC formula, the fifth wave started on May 7. But since these numbers alone no longer translate into curfews, lockdowns or liquor bans, @nicd_sa researchers believe a new benchmark may be necessary. bit.ly/3wkRRwv
3. The @nicd_sa's @Dr_Groome says #COVID19 case numbers have become less meaningful — using them to calculate a wave, even more so: “Severe outcomes like hospitalisations and deaths are better metrics to use now that we have seen the decoupling of cases and severe outcomes.”
4. Decoupling means that a smaller % of new cases now fall very ill with #COVID or die of it than in pre-#Omicron waves. A Nature study found people infected with Omicron have a 2-5-fold lower risk of dying than people infected with the #Delta variant.
nature.com/articles/s4157…
5. So what we now want to keep track of most is whether — and when — new infections will put strain on our health system because of hospital admissions, rather than how many new #COVID cases we have, says @Dr_Groome.
6. @Dr_Groome: "The purpose of calculating the beginning + end of previous waves with case numbers = 2 adjust public health measures accordingly. But increases in cases alone = no longer lead 2 public health interventions. We now need 2 redefine what we consider 2 be a wave."
7. So why should we still care about #COVID19? People still die, even of #Omicron. 9 557 people in South Africa died of #COVID between 1 Jan 2022 and 15 May (almost all cases were Omicron infections) bit.ly/3wkRRwv
8. 9 557 #COVID19 deaths = only the reported cases. @MRCza estimates that at least 85% of excess deaths in the country can also be attributed to COVID.
Excess deaths tell researchers how many more people died in a certain period of time than those expected.
9. Since the start of 2022, SAMRC and University of Cape Town researchers tallied an extra 22 823 deaths. 85% of excess deaths could be #COVID-related, so the true death count for 2022 (so far) = likely more than triple the official figures (32 380).
bit.ly/3wkRRwv
10. Compare this to other respiratory infections such as the flu. According to @nicd_sa, flu kills between 6 000 and 11 000 people per year in the country.
11. But dying or getting hospitalised are not the only COVID-related risks — research shows #COVID can cause long-term heart (cardiovascular), brain (neurological) or hormonal (endocrine) effects.
12. Scientists in the UK took scans of people’s brains before + after they were infected with #COVID19. People who caught the bug showed signs of brain damage in brain sections that play a role in memory/ smell — even people who had mild forms of #COVID. go.nature.com/3a1IQ2B
13. There's also #LongCOVID. International studies have shown that long COVID could affect between 25% and 35% of people who were infected with SARS-CoV-2. bit.ly/3wkRRwv
14. #LongCOVID has a list of over 50 debilitating symptoms such as persistent headaches, fatigue, hair loss, shortness of breath and attention disorder, that can show up months after someone has recovered from #COVID19 infection.
15. Recent studies have shown that even people who had no visible symptoms when they got infected with SARS-CoV-2, can develop #LongCovid. ncbi.nlm.nih.gov/pmc/articles/P…
16. Most people with #LongCOVID just don’t recover after they get sick initially, says Resia Pretorius, the head of Stellenbosch University’s department of physiology. “Instead, their symptoms ebb and flow, but never fully disappear.”
17. New #COVID19 treatments are becoming available to lower the chance of severe disease and death in infected people — but these treatments are expensive, for now, they're mostly only available in high-income countries.
18. In the absence of these #COVID19 treatments in SA's public health sector, the best ways to reduce your risk of falling very ill with #COVID = either not get infected or to develop immunity from getting vaccinated, naturally infected, or both. bit.ly/3wkRRwv

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More from @miamalan

May 10
🧵1. #JoePhaahla, #HIV:
- 8 million SAs = HIV positive in 2021
- Nr on #ARV's: 5.4 million, so there's a gap of over 2 million who are projected to be HIV positive but not on treatment.
- Main concern = spread amongst young people, especially young girls.
2. SA's policy = to provide #HIV treatment for everyone who tests positive to achieve viral suppression and reduce transmission.
3. #JoePhaahla:
- Our target is to scale-up #HIV treatment by another 700 000 this year to above 6 million people.
- Our treatment coverage of those who know their status has slipped to only 76% since #COVID19 Because of COVID we have missed on 90/90/90 target for 2020.
Read 4 tweets
May 10
🧵1. BREAKING: @SAHPRA1 has approved a 3-month extension of the expiry dates of #Pfizer #COVID19 shots when stored at -70 °C. @HealthZA says it's stored the 92,370 jabs that originally expired on March 31 at -70°C, so they'll now only expire on June 30th and can still be used.
2. Why are there new expiry dates?

#COVID19 jabs have only been around for +/- 1.5 years. Manufacturers can only test if they stay stable 4 extended periods of time as the time moves on. They've now established that Pfizer jabs can be kept at -70°C for 12 (instead of 9) months
3. How many #COVID19 #Pfizer jabs does SA have left?
@healthza says on May 9:
10,593,060 doses

When do these jabs expire? (next tweet)
Read 6 tweets
May 3
🧵1. Is SA in a 5th #COVID19 wave?
@ProfAbdoolKarim: It’s too early to tell. We don’t have reliable data 2 compare infections of the last 7 days with the previous 7 days. Why? SA = 2 holidays in the past week, so testing nrs = down + can’t reliably be compared 2 the previous wk.
2. Why do we need to compare data of the last 7 days with the previous 7 days?

- For a 5th wave the 7-day moving average would have doubled every 2-3 days (so we would have had 10,000+ cases by now)
- But we’ve seen only a 52% increase: from 3,097 (April 24) to 4,693 (May 1)
3. Does the lower-than-expected increase for a new wave mean we’re not in a 5th #COVID19 wave?

Not necessarily — it could just be that testing numbers are down because of the 2 public holidays in the past week (far fewer people go to test on public holidays).
Read 11 tweets
Apr 22
🧵1. It's been 2 years of mostly only #COVID19 reporting. What has the pandemic taught me about journalism?

Lesson 1: Accurate information is pretty useless if people don't understand it. Explanatory journalism should be specialist field: bit.ly/36xvxWm
Lesson 2: Pandemics like #COVID19 make things happen faster. But to speed things up you need more hands and skills — you're going to get nowhere on your own.

The power lies in journalism oranisations sharing skills and resources. So learn to work together, or miss the bus.
Lesson 3: FOCUS + be strategic. If you try to cover everything during a pandemic, you'll end up covering nothing. Do the stuff you're best at + leave the rest to others.

@Bhekisisa_MG focused on explanatory + in-depth stories — we rarely covered news: bit.ly/36xvxWm
Read 10 tweets
Apr 13
🧵1. What will a potential next #COVID19 variant of concern look like?
@ProfAbdoolKarim:
We dunno but it's unlikely 2 look like #Omicron, Beta/Delta, unless it arrives only when immunity from Omicron infection = waned
Why? Omicron infection = good immunity @ itself, Beta, Delta
2. Since #Omicron = spreading so fast + widely vs. past variants of concern, there are many vaxxed people who became infected with omicron and now have good immunity 2 all existing variants of concern. Similar immunity = evident in unvaxxed people with past Omicron infection.
3. Since infection with #Omicron creates such good immunity 2 existing variants of concern it'll be difficult 4 Beta/Delta 2 come back + cause a new wave. The next wave has 2 be caused by a variant with little similarity 2 Omicron/will need 2 arrive when Omicron immunity = waned
Read 10 tweets
Apr 8
🧵1. Will SA see a 5th wave?

1. @ProfAbdoolKarim says likely, but we don’t know if it'll be big or small. What we do know, is that we will almost certainly see a new variant. Each wave in SA has been driven by a new variant.

So what will a new variant look like? (next tweet) Image
2. What will a new variant look like (let’s call it Pi)?

We dunno.

But for Pi to become the dominant variant it will have to be more transmissible than #Omicron, or it won’t be able to replace/out-compete it (if they were athletes, Pi would need to run faster than Omicron). Image
3. Even if Pi (potential new variant) can outsmart our immune systems to some extent, it will likely still need to be more transmissible than #Omicron in order to overtake it. Image
Read 9 tweets

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