Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 24322 new #COVID19 #SARSCoV2 sequences!

Check out new seqs from Togo (1) & Uganda (120) on nextstrain.org/ncov/africa.

(Thanks to @transvihmi, @ird_fr, @Inserm, @UVRIug, @MRC_Uganda, @LSHTM)

1/14
New sequences from Aruba (36), Bonaire (26), Brazil (368) and Curacao (30) can be found on nextstrain.org/ncov/south-ame….

(Thanks to @rivm, Instituto Adolfo Lutz, @hosp_einstein , @UFCSPA)

2/14
You can see the new sequences from Australia (24) and New Zealand (20) on nextstrain.org/ncov/oceania.

(Thanks to @NSWHPathology @WestSydHealth @Sydney_Uni PHV-FSS #PathWest Laboratory Medicine @WAHealth #CIDMPH @ESRNewZealand @MathStorey @Joepdl @sciolato)

3/14
New sequences from Belgium (120) and Czech Republic (44) can be found on nextstrain.org/ncov/europe.

(Thanks to Imelda Hospital @az_delta @AZKlina @IPG_Gosselies @MedMicroLab_UA @UZAnieuws @ULBruxelles CUB Hôpital Erasme LHUB @ULBruxelles @IMTM_Olomouc @UPOlomouc)

4/14
You can find the new sequences from Estonia (308), France (578) and Germany (345) below.

(Thanks to Laboratory of Communicable Diseases Estonia @EurofinsGroup @CHU_Grenoble @JossetLab @Antoninbal @institutpasteur @CHUdeToulouse @CHUNimes @HeinrichPette)

5/14
New seqs from Hungary (29), Italy (389), Netherlands (1985) & Poland (93) can be seen below.

(Thanks to National Public Health Center National Biosafety Laboratory @Ceinge @Tigem_Telethon @AUSLRomagna @INMISpallanzani @SabesAsdaaBZ @unibait @rivm @NIZP_PZH @EurofinsGroup)

6/14
New sequences from Romania (4), Spain (78), Sweden (128) and Switzerland (259) can be seen below.

(Thanks to Stefan S. Nicolau Institute of Virology SeqCOVID-SPAIN consortium @IBV_CSIC @FOIresearch @Folkhalsomynd @Hopitaux_unige @unige_en @gcevd @swissgenomics)

7/14
You can find the new sequences from the United Kingdom (9358) below.

(Thanks to @CovidGenomicsUK)

8/14
New sequences from Bangladesh (24) and Indonesia (94) can be found on nextstrain.org/ncov/asia.

(Thanks to @chrfbd @senjutisaha @ChrfSaha @SajibMSI @MalakerRoly @BinZabed @HafizShakil703 @msohag10 @UnandOfficial NIHRD Indonesia)

9/14
Check out the new sequences from Japan (150) below.

(Thanks to Nagoya Medical Center, NIID Japan, Sapporo Institute of Public Health, Gunma Institute of Public Health and Environmental Sciences)

10/14
New sequences from Kazakhstan (3) can be seen below.

(Thanks to RSE National Center for Biotechnology & National Center of Expertise)

11/14
New sequences from Mexico (24) & the USA (9684) can be found on nextstrain.org/ncov/north-ame….

(Thanks to @K_G_Andersen, @scrippsresearch, @cinvestav, INDRE Mexico @CDCgov @AZDHS @TGen @K_G_Andersen @scrippsresearch @ucscgenomics @NathanGrubaugh @JosephFauver @YaleSPH)

12/14
USA seqs also thanks to @WADeptHealth @seattleflustudy @UWVirology @UW Wyoming Public Health Lab @LSUHS @unrmed @FulgentGenetics @SonoraQuestLabs @DCDFS @StateHealthIN Cytocheck Laboratory @NJDeptofHealth @pavitrarc.

14/14

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More from @nextstrain

31 Mar
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 9739 new #COVID19 #SARSCoV2 sequences!

Check out the new sequences from Australia (14) on nextstrain.org/ncov/oceania.

(Thanks to #RoyalPrinceAlfredHospital, PHV-FSS)

1/14
New sequences from Libya (76), Morocco (2) & Nigeria (1) can be seen on nextstrain.org/ncov/africa.

(Thanks to Genologica Málaga, Laboratoire de Recherche et d'Analyses Medicales de la Gendarmerie Royale, @NCDCgov)

2/14
Seqs from Argentina (769) & Brazil (3) on nextstrain.org/ncov/south-ame….

(Thanks to HRU @CadicUshuaia @UNTDF @intaCIAP Biocódices @gcba @CONICETDialoga @intaargentina LMBA @AcuarioRParana @ProyectoPAIS4, Laboratorio Central Mg. Luis Alfredo Pianciola @MinSaludNeuquen, @fiocruz)

3/14
Read 14 tweets
30 Mar
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 11073 new #COVID19 #SARSCoV2 seqs!

New seqs from Australia (16) on nextstrain.org/ncov/oceania.

(Thanks to @NSWHPathology, @WestSydHealth, @Sydney_Uni, #PathWest Lab Med, @WAHealth, #CIDMPH)

1/9
Check out the new sequences from India (99), Indonesia (10) and Pakistan (12) on nextstrain.org/ncov/asia.

(Thanks to @icmr_niv, @DBTIndia, #NIMHANS, @DBT_NCCS_Pune, @ILS_Bhubaneswar, NIHRD Indonesia, @NIH_Pakistan)

2/9
You can find the new sequences from Belgium (834) and Czech Republic (100) on nextstrain.org/ncov/europe.

(Thanks to @az_delta @JessaZiekenhuis @umons @GroupeJolimont Rega Institute at @KU_Leuven @FNBrno Institute of Applied Biotechnologies)

3/9
Read 9 tweets
30 Mar
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 48183 new #COVID19 #SARSCoV2 sequences!

New sequences from Côte d'Ivoire (33) and Kenya (5) can be seen on nextstrain.org/ncov/africa.

(Thanks to CHU Bouaké @KEMRI_Kenya @tagcc_info)

1/20
Check out the new seqs from Angola (71), Nigeria (11) and South Africa (276) on nextstrain.org/ncov/africa. Botswana (1) currently not visible due to random subsampling.

(Thanks to @BotsHarvard @NCDCgov @krisp_news @rjlessells @Tuliodna @EduanWilkinson @nicd_sa @BotsHarvard)

2/20
Check out the new sequences from Australia (34) and French Polynesia (10) on nextstrain.org/ncov/oceania.

(Thanks to #RoyalPrinceAlfredHospital, PHV-FSS, #PathWest Laboratory Medicine, @WAHealth, @JossetLab @Antoninbal)

3/20
Read 20 tweets
24 Mar
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 10924 new #COVID19 #SARSCoV2 sequences!

Check out the new sequences from Indonesia (1) and Singapore (7) on nextstrain.org/ncov/asia.

(Thanks to @upnjakarta, NCID NPHL Singapore)

1/10
New sequences from Botswana (2), Libya (1) and South Africa (4, currently not visible due to random subsampling) can be found on nextstrain.org/ncov/africa.

(Thanks to @BotsHarvard, Genologica Málaga, @nhls_sa, @nicd_sa)

2/10
New sequences from Australia (27) and Papua New Guinea (43) can be seen on nextstrain.org/ncov/oceania.

(Thanks to PHV-FSS, National Public Health Lab & Centre for Infectious Diseases Singapore, Central Public Health Lab Papua New Guinea)

3/10
Read 10 tweets
22 Mar
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 11079 new #COVID19 #SARSCoV2 sequences!

You can find the new sequences from Brazil (38) and Chile (71) on nextstrain.org/ncov/south-ame….

(Thanks to @fiocruz, Instituto Adolfo Lutz, @ispch)

1/13 Image
Check out the new sequences from Botswana (4), Burkina Faso (9), Rwanda (79) and Togo (1) on nextstrain.org/ncov/africa.

(Thanks to @BotsHarvard, @CentreMURAZ, @GIGA_ULiege, @transvihmi, @ird_fr, @Inserm)

2/13 Image
Check out the new sequences from Australia (15) on nextstrain.org/ncov/oceania.

(Thanks to #RoyalPrinceAlfredHospital, @NSWHPathology, PHV-FSS, #PathWest Laboratory Medicine, @WAHealth)

3/13 Image
Read 13 tweets
25 Jan
Thanks to #opendata sharing by @GISAID, we've updated nextstrain.org/ncov with 2507 new #COVID19 #SARSCoV2 sequences!

Check out the new seqs from Ghana (13), Brazil (110) and Chile (3) below.

(Thanks to @UHASGhana, @hosp_einstein, Instituto Adolfo Lutz, @uandresbello)

1/7
@GISAID @UHASGhana @hosp_einstein @uandresbello Check out the new sequences from Belarus (25), Belgium (3), Finland (62), France (148) and Germany (93) on nextstrain.org/ncov/europe.

(Thanks to @ChariteBerlin @MedMicroLab_UA @helsinkiuni @TimoSmura @cerbaresearch @institutpasteur @HHU_de)

2/7
@GISAID @UHASGhana @hosp_einstein @uandresbello @ChariteBerlin @MedMicroLab_UA @helsinkiuni @TimoSmura @cerbaresearch @institutpasteur @HHU_de You can find the new sequences from Italy (1, currently not visible due to subsampling), Portugal (99) and Romania (4) below.

(Thanks to Lab. Microbiologia e Virologia Cotugno A.O. dei Colli @borges__vitor @raqguiomar @GOMES__JP @irj_pt Cantacuzino Institute Romania)

3/7
Read 7 tweets

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