Mia Malan Profile picture
Dec 14, 2021 27 tweets 23 min read Read on X
BREAKING [Thread]: 1. SA’s first real-world data on #Pfizer’s #COVID19 jab’s protection @ #Omicron infection + hospitalisation via @Discovery_SA + @MRCza

Note: This is data from the 1st 3 weeks of the outbreak, so it might change - regard it as preliminary real-world data Image
2. What data are findings based on?
1. @Discovery_SA = SA’s largest health insurer (3.7 mil members)
2. They used 211,000 positive #COVID19 PCR tests of adults (18+)
3. 41% of 211,000 + tests = received 2 doses of #Pfizer ImageImage
3. Here is how #Omicron has progressed in SA:
#Omicron = now 90% of #COVID infections in SA ImageImage
4. How effective is #Pfizer’s jab @ hospitalisation due 2 #Omicron?
1. 2 doses of #Pfizer’s jab makes vaccinated people 70% less likely 2 get hospitalised vs. unvaccinated people
2. This = lower than 93% protection the jab gave in SA’s #Delta wave (93% = @Discovery_SA data) Image
5. Protection of 2 doses of #Pfizer @ hospital admission due to #Omicron is maintained across all ages (18-79 years), but slightly lower for older age groups:
18-29: 92%
30-39: 75%
40-49: 82%
50-59: 74%
60-69: 67%
70-79: 59%
6. Important to note that the lower protection (down from 93% to 70%) against hospitalisation because of #Omicron could be because older people were vaccinated first in SA, so there has been a longer period for vaccine-derived immunity to wane than with younger age groups
7. 70% protection for vaccinated people @ hospital admission = still a high level of protection. WHO regards a #COVID19 vaccine effective if it provides 50% protection: bit.ly/325K60Y
8. What about the risk of hospitalisation due to #Omicron infection compared to the variant (D614G) which dominated SA’s 1st #COVID wave?

Adults (18+) infected with #Omicron = 29% less likely to be hospitalised vs. infection with other variants Image
9. What are confounding factors for #Omicron real-life hospital admission data in SA?
High seroprevalence #SARS-CoV2 antibody levels in SA population (so antibodies due to previous #COVID19 infection) - in Gauteng = as high as 70% + of people
10. Hospital admissions (anecdotal data):
1. Most #Omicron admissions = unvaccinated people (16% of ICU admissions = vaccinated)
2. High % of incidental admissions (people going 2 hospital 4 things other than #COVID + test 4 admission + find out they have #COVID) Image
11. Out of hospital data (anecdotal):
1. @Discovery_SA is seeing milder illness with #Omicron (early data) with recoveries within 3 days
2. Higher reinfections (so people who've had #COVID19 get infected again) and breakthrough infections (vaccinated people getting infected) Image
12. #Omicron cases are growing much faster than during the #Delta wave, but hospitalisations slower. For the Omicron wave, SA has reached 60% of cases reached during the #Delta peak but we have reached only 20% of the hospital admissions of the Delta wave. Image
13. Children and #Omicron:
1. Main diagnoses 4 kids who get hospitalised = bronchiolitis and pneumonia, often with severe gastrointestinal symptoms + dehydration
2. Most kids = not hospitalised = mild symptoms (sore throat, nasal congestion, headache, fever, resolves in 3 days) Image
14.
1. Kids below 18 infected with #Omicron = 20% higher risk of admission 4 #COVID19 complications vs. 1st wave
2. This aligns with the 3rd #Delta wave (June-Sep 2021) when an increase in pediatric admissions (0-5 yrs) = also seen (so 4th wave risk = similar to 3rd wave risk)
15. To date, kids below 5 = higher admission risk than adults, but this could be driven by incidental admissions. This trend is starting to change: it looks like fewer children and more adults are starting to get admitted (@nicd_sa = similar findings). Image
16. NB data to point out re children:
1. The risk of kids testing + for #COVID19 because of #Omicron = 51% lower compared to adults
2. @nicd_sa/@MRCza data from Tswhane show most kids = admitted 2 hospital = incidental admissions
17. Vaccinated people = 33% less likely 2 get infected with #Omicron than unvaccinated people (this is a drop from 80% protection during the #Delta wave)

Here's how #Pfizer protection @ infection wanes 4 Omicron:
1. 2-4 wks after 2nd dose: 56%
2. 3-4 mnths after 2nd dose: 25% Image
18. What about the risk of reinfection?

1. People infected with #Delta = 40% relative risk of reinfection with #Omicron
2. People infected with Beta = 60% relative risk of infection with Omicron Image
19. More data on the reinfection risk with #Omicron:

@SACEMAdirector et al. in SA found the relative risk of reinfection with #Omicron for people who previously had #COVID and get exposed again = 3 times higher than for reinfection with #Delta/#Beta:
20. Two shots of #Pfizer continues to provide good protection @ hospitalisation, but protection has dropped from 93% with #Delta to 70% with #Omicron. Image
21. The protection @ hospitalisation that 2 shots of #Pfizer provide @ #Omicron infection for different ages:
- Highest protection = 18-29 yrs
- Lowest protection in 70-79 yrs
(Could be because 70-79 = vaccinated before 18-29, so = been more time for 70-79's immunity 2 wane) Image
22. This graph shows that #Omicron infection is associated with a 29% lower risk of hospital admission for adults compared to the 1st wave, but children have a 20% higher admission risk (but as mentioned previously, looks like it's starting to change). Image
23. Although excess deaths were high for the week of 28 Nov, it's still much lower than in previous #COVID19 waves (this correlates with lower #Omicron death rate data in hospitals, but it's early times) Image
24. How did @Discovery_SA obtain #PCR test data?
1. Results from @LancetLab_ZA [private lab] (45%)
2. Gauteng test results 55%
3. Results from hospital patients 8% Image
25. Summary:
1. Vaccination continues to provide significant protection @ falling seriously ill with #COVID (although reduced to 70%)
2. High nrs of breakthrough infections in vaccinated people (protection @ infections reduced from 80% to 33%)
3. Reinfection risk = increased Image
Pass word for recording = Q8e3aQ

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More from @miamalan

Jan 17
[Thread] 12 things to know about the the proportion of pregnant women infected with #HIV from SA’s latest antenatal HIV survey. The survey is conducted by the @nicd_sa.

(Analysis of our 95-95-95 goals in my next thread later in Jan).

1/12 Image
2. What is the antenatal #HIV survey?

1. It measures the % of HIV+ pregnant women between the ages of 15 + 49.
2. Only women using state pregnancy clinics take part.
3. The survey has been conducted each year between 1990-2015, then in 2017, 2019 +2022. Image
3. How many pregnant women between 15-49’s blood was tested for #HIV? 37 828 out of 40 542 collected samples.
- 37 7171 = Black African women
- 37 541 didn’t live with the dad of their child
- 35,635 of dads were 5 years+ older than moms (this makes them more likely to get HIV) Image
Read 12 tweets
Jan 10, 2023
JUST IN [Thread]:
1.@healthza's Lesley Broomberg:
An extra #COVID19 booster jab for people of 18+ in SA will become available towards the end of JANUARY
- People of 50+ qualify for a 5th dose
- People of 18+ qualify for a 4th dose
2. Lesley Broomberg: Can you mix and match with additional boosters? Yes. You can choose whether you want a #JnJ or #Pfizer booster.
3. Lesley Broomberg:
Will teens of 12-17 qualify for boosters? Not at this stage. Why not? The #VMAC = not recommended booster doses for 12-17, based on an understanding that the protection provided by 2 #Pfizer doses = adequate, as 12-17 = @ low risk of severe #COVID19 illness
Read 5 tweets
Jan 10, 2023
[Thread] #JoePhaahla:
- Genomic surveillance Network reported the detection of the new subvariant XBB.1.5 in SA of a sample of a patient tested on 22 Dec
- Details of the patient = not known, it was a random sample taken for testing
- XBB.1.5 = also common in US
2. XBB.1.5 = common in US
#JoePhaahla:
- 97%+ of #COVID19 cases worldwide = still #Omicron
- XBB.1.5 cases = no major change in hospitalisations or deaths
- Immunity of SAs (vax and natural immunity) = still strong, so that is why we haven't seen much change in terms of hospital admissions/deaths
Read 5 tweets
Dec 13, 2022
🧵1. SA's @aspenpharma will be making 4 jabs (fill + finish) — pneumococcal, rotavirus, meningococcal, hexavalent — from 2023.

How will they finance this?
With a $30 million grant from @CEPIvaccines + @gatesfoundation.

Which APIs will Aspen use?
India's Serum Institute's
2. Why is it NB that an African company makes these jabs?

#Africa imports almost all its jabs. #COVID19 showed us this results in Africa being last in line to get vaccines during pandemics. The grant to Aspen is 1 of the 1st steps to change that.
3. What's the goal?

By 2040, the African Union wants #Africa to make 60% of the jabs the continent uses.

Why?
So that Africa is better equipped 2 respond 2 outbreaks (by developing the ability to make jabs + have technology in place to also make new jabs during pandemics).
Read 6 tweets
Dec 2, 2022
🧵1. BREAKING: @SAHPRA1 has confirmed the registration of the #HIV prevention jab, #CABLA in South Africa. On Thursday, #ViiVHealthcare issued their statement. ImageImage
2. Who can use the jab? @SAHPRA1 didn't specify restrictions for use in their statement, only that it is "a highly effective option for people at substantial risk of #HIV infection." Image
3. How does the jab work? It uses an #ARV called cabotegravir that prevents #HIV from replicating and entering someone’s cells. It’s taken every two months. Read my latest story for more. bit.ly/3ER7ejq
Read 5 tweets
Dec 1, 2022
🧵1. @SAHPRA1 says it’s “days away” from announcing a decision on the registration of the #HIV prevention jab, #CABLA. The shot virtually wipes out your chances of contracting HIV through sex + needs to be taken every 2 months. bit.ly/3ER7ejq#WAD2022
2. How does the jab work? A bit like contraception, says @LindaGailBekker. “U take contraception before sex 2 prevent pregnancy. Similarly, u take the jab before being exposed 2 #HIV 2 prevent infection.” Listen 2 Linda-Gail on @bhekisisa’s #HealthBeat. bit.ly/3FjBlS8
3. What makes #CABLA work? An antiretroviral drug called cabotegravir. Some people with #HIV use it for treatment, along with other #ARVs. The drug prevents #HIV from entering your cells. bit.ly/3ER7ejq
Read 8 tweets

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