My Lord, things change RAPIDLY with #omicron.

And they are not changing for the good.

Your 12/22 #COVID19 update.

#Cases and #Hospitalizations.

As always, Florida-centric with some national context.

Brace yourselves.

covid19florida.mystrikingly.com

1/14
Purview of 7-day avg daily cases over the past 8 wks.

In the first 6 wks in this window, <2000 per day.

Last wk, 2702 per day.

Most recent wk of reported data, 10,904 per day.

# of cases in today's report (20,194) exceeded the WEEKLY TOTAL over any of the past 7 wks.

2/14
To appreciate the rapid rise, here's a map showing change in avg daily cases compared to just 2 weeks ago.

FL - 499% increase (3rd highest: DC, Hawaii)

Detailed #Florida numbers at bottom right of figure.

3/14
FL was lowest in the most recent 7-day avg daily cases not too long ago, after built-up immunity from a terrible Delta surge.

We're now back up to 23rd highest, middle of the pack.

But look at those trajectories in NY, DC, and basically where all those red arrows are.

4/14
Here's the other way to view how pronounced the recent per capita infection rate is (y-axis) compared to how pronounced the recent changes in avg daily cases (x-axis) has been.

I mean look at those % increases for NYC, DC, FL, and HI!

5/14
It's important to remember what you're seeing with the pronounced increase in use of at-home tests.

If there is no follow-up PCR, or illness the drives a person to seek health care, are county/state health depts even learning of those cases?

What about re-infections?

6/14
Either way, it ain't just cases.

Since December 1:

We're up in adults now hosp with confirmed C19 from 977 to 1457. Even adults in the ICU up 61 patients.

Kids not much better, up from 17 to 45.

As expected, new daily admissions also rising, from 160 to 304 in 3 weeks.

7/14
In whom are new confirmed C19 hosp admissions increasing?

These plots show the total admissions over the past 7 days, per 100,000 people, by age group since Dec 1.

As you can see, increases in pretty much every age group, including our most vulnerable (according to age).

8/14
This plot shows how pronounced the recent C19 per capita hospitalization rate is (y-axis) compared to how pronounced the recent changes in avg daily admissions (x-axis) have been.

FL is comparatively in the lowest quartile of states in current rate, but increasing rapidly.

9/14
Finally, this is how avg daily cases (left axis) have tracked w avg daily hospital admissions (right axis) in FL since July 2020.

We compare cases 'today' vs. hosps 5 days later (lagged). So, my graph stops before the last 5 days of the most rapid case increases.

cont'd

10/14
What remains to be seen is the extent to which these two lines continue to track together, or diverge.

Knowing how that case line is increasing, and seeing how hospitalizations tracked cases during #delta, we should all pray for considerable divergence.

11/14
Maybe one bright spot? (and, yes, I'm grasping at straws here)

During December, the % of the US pop optimally immunized is slowly increasing, meaning that newly vax and boosters are outpacing waning immunity from people overdue for boosters.

Still a LONG way to go.

12/14
These metrics are scary, but no state data with stratification by vax or prior infection status. Any luck elsewhere?

@bethlinas @nataliexdean @angie_rasmussen @berthahidalgo @EpiEllie @BillHanage @bhrenton @ashtroid22 @Cleavon_MD @choo_ek @Theresa_Chapple @WhitneyEpi

13/14
These metrics are scary, but no state data with stratification by vax or prior infection status. Any luck elsewhere?

@paimadhu @sarahzhang @firefoxx66 @K_G_Andersen @kakape @Craig_A_Spencer @lucystats @PWGTennant @_stah @gregggonsalves @HelenBranswell @florian_krammer

14/14

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More from @JasonSalemi

21 Dec
In my thread last night on just a few of the reasons for D-I-R-T-Y data on #COVID19 #vaccination status, I failed to explain the potential impact of duplicate records being created.

Here's that simplified explanation.

1/5
In the fig, we have what actually happened (top), a situation in which the booster got assigned to a different record (treated as a different person in calculations), and a hopefully rare situation in which all three doses were treated as though they belonged to diff people.

2/5
Here's an example when 7% of people completing a 2-dose series had duplicate records that were created.

Those w/ a completed initial series was UNDERestimated by 6.3%.

Those w/ "only first dose" was OVERestimated by 12.6%.

The "at least one dose" exceeds the pop count!

3/5
Read 5 tweets
21 Dec
#COVID19 #vaccination data.

Vax estimates above 100%.

Millions of people seemingly failed to complete their initial 2-dose series.

Unexpectedly low rates of booster uptake.

A thread explaining how these data might be D-I-R-T-Y.

1/16

bloomberg.com/news/articles/…
PROBLEM #1: WRONG PLACE OF RESIDENCE

People may be assigned to a county based on where they got the shot and not where they lived. [that's the numerator]

Since the denominator is based on place of residence, the % vaccinated can end up out of whack.

2/16
Problem occurs when misclassification in one direction (calling a non-Hillsborough resident a Hillsborough resident to a greater extent than the opposite direction (calling a Hillsborough resident a non-Hillsborough resident).

More likely to happen for specific age groups.

3/16 Image
Read 18 tweets
18 Dec
#Omicron can kiss my a$$.

Now that that's out of the way, a brief #Florida update.

Well, as expected, cases are increasing at a rapid rate. More than a doubling from last week.

1/12
As we dive deeper to the county level, although the increases are pretty consistent, our 3 largest counties in the southeastern part of the state are skyrocketing.

1-week change in 5 largest counties:
- Dade 322%
- Broward 213%
- PB 160%
- Hillsborough 60%
- Orange 50%

2/12
The percent changes for this past week (far right bar) reflect increases for every age group, but most pronounced for those 20-49.

The smallest increase is in the most vaccinated age group (and the most likely to take precautions), those people 65+.

3/12
Read 13 tweets
7 Dec
In the US, the best #COVID19 #vaccine data comes from states, reporting @CDCgov

But the current reporting as "at least 1 dose" & "fully vaccinated" neglects the impact of waning immunity, esp among vulnerable populations.

An important🧵 from me, @BethPathak & @COVKIDProject

1/
When #COVID19 vaccines first became available, nobody knew how long the benefits would last. Many hoped the shots would offer full protection for a year or longer.

2/
Unfortunately, well-conducted research studies in the summer of 2021 have demonstrated that the effectiveness of the vaccines starts to decline (wane) after 4-6 months. For the Janssen (J&J) vaccine, waning begins after only 2 months!

3/
Read 27 tweets
26 Sep
County-level #COVID19 deaths in #Florida

A cautionary tale about comparisons: data sources matter!

Much attention recently paid to county-level COVID-19 death data being made available again in FL...thru the federal "Community Profile Report".

healthdata.gov/Health/COVID-1…

1/
But near-current county-level #COVID19 deaths in #Florida (and throughout the country) has long been available through the National Center for Health Statistics at @CDCgov.

Link below.

2/

data.cdc.gov/NCHS/Provision…
People have already pointed to differences between these data sources as further "evidence" that @HealthyFla is getting something wrong or hiding something.

Others have used both data sources to calculate rates and compare counties on their cumulative COVID-19 mortality.

3/
Read 18 tweets
25 Sep
#Florida has finally been seeing dramatic improvements in its #COVID19 numbers.

It's been a while since I've done this, but it's warranted, so here goes a Florida update 🧵

Viz using covid19florida.mystrikingly.com

1/ Image
New daily infections (cases) have been decreasing in September as rapidly as they increased during this #delta surge.

We're where we were in mid-July, with numbers also similar to where we were in early February.

Under 7,700 cases per day over the last 7 days.

2/ Image
The chart below highlighting the past 8 weeks tells the story. After plateauing for 2 weeks towards the end of August, it's been 4 straight weeks of considerable decreases in cases.

We don't want to be at 7,000+ cases per day, but moving in the right direction...fast.

3/ Image
Read 33 tweets

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