Raj Rajnarayanan Profile picture
Nov 29 11 tweets 9 min read
#COVID19 #VariantDashboard - #UnitedStates
TOP lineages (15-DAY TRENDS):

14.7% BQ.1.1
11.9% BQ.1
4.4% XBB.1
3.8% BA.5.2.1
3.1% BA.5.2
3.1% BQ.1.3
2.8% BF.7
2.8% BQ.1.1.4
2.5% BQ.1.2
2.5% XBB.1.5

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 11/28/22

1/n
Sequence count by US State

Share of sequences with specimen collection dates in the last 15 days.

New York has submitted a HUGE share of sequences this period

2/n
Granular details -#VariantDashboard #USA #15DayTrends

3/n
.@CDCgov updated variant proportions estimates on 11/25/2022 (CDC updates nowcast estimates every Friday)

Several BQ* are circulating at >1% & BA.2.3.20* are good candidates to be included in CDC's Nowcast estimates next week



4/n
The Great Convergence!

Tracked #VariantSoup with key #Spike mutations @ 346, 356, 444-446, 450, 452, 460, 486, 490, 493-494 positions

public.tableau.com/app/profile/ra…

5/n
Predicted Immune Escape and ACE2 binding of top lineages in USA (relative to BA.2)

Bivalent boosters (OG/Omicron.BA.5) will potentially protect the boosted from getting severe disease/hospitalizations.

Please get #boosted ASAP!

public.tableau.com/app/profile/ra…

6/n
#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…

7/n
#COVID19 #Hospitalizations in the #UnitedStates

Please get #boosted (especially > 50 yr old and immune compromised) and #MaskUP!

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…

8/n
Status of the latest #COVID19 Wave in #NewYork #BellwetherState

Top Lineages (#15DAYTrends):

BQ.1 (17.8%)
BQ.1.1 (14.5%)
XBB.1 (6.8%)👀
BQ.1.1.4 (4.7%)
XBB.1.5 (4.3%)👀
BQ.1.3 (3.7%)
BQ.1.11 (3.7%)
BQ.1.14 (3.1%)
CQ.2 (3.0%)👀

9/n
Rise of XBB family of lineages especially XBB.1 and XBB.1.5 in NY is concerning!

11/n

finance.yahoo.com/news/york-beco…

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More from @RajlabN

Nov 30
#COVID19 #VariantDashboard - #UnitedStates
TOP lineages (15-DAY TRENDS):

11.4% BQ.1
10.8% BQ.1.1
4.8% BA.5.2.1
4.8% BQ.1.22
4.1% BA.5.2
2.9% XBB.1
2.4% BQ.1.3
2.4% BF.7
2.4% BA.4.6
2.2% BQ.1.12

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 11/29/22
1/n Image
Sequence count by US State

Share of sequences with specimen collection dates in the last 15 days.

New York has submitted a big share of sequences this period

2/n Image
Granular details -#VariantDashboard #USA #15DayTrends

3/n Image
Read 14 tweets
Nov 28
#COVID19 #VariantDashboard - #UnitedStates
TOP lineages (15-DAY TRENDS):

11.2% BQ.1.1
11.0% BQ.1
5.7% BA.5.2.1
4.0% BA.5.2
3.4% BA.4.6
2.9% BQ.1.3
2.7% XBB.1
2.6% BF.7
2.6% BQ.1.12
2.6% BA.5.1

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 11/27/22
1/n Image
Sequence count by US State

Share of sequences with specimen collection dates in the last 15 days.

New York has submitted a lion's share of sequences this period

2/n Image
Granular details -#VariantDashboard #USA #15DayTrends

3/n Image
Read 11 tweets
Oct 21
#SARSCoV2 #VariantProportions - #USA |10/21/22

@CDCgov #Nowcast estimates

BA.5*: 62.2%
BA.4.6: 11.3%
BQ.1*: 9.4%
BQ.1.1*: 7.2%
BF.7*: 6.7%
BA.2.75.2*: 1.3%

Does not include recombinant lineage XBB yet

covid.cdc.gov/covid-data-tra…
Read 4 tweets
Oct 21
#Omicron family swells to 500+ sublineages!

Currently, we are watching "Omicron" BQ.1.1*

Expected to outcompete other Omicrons in circulation including Omicron.BA5*

Omicron.BJ1/ Omicron.BM.1.1.1 recombinant XBB might give a tough fight to Omicron.BQ.*
Introducing Omicron BQ* family

All of them are Omicrons too... Omicron.BQs

- 36 of them as of now..
Introducing Omicron BA.2.75* family

All of them are Omicrons too.. Omicron BA.2.75s

-69 of them as of now
Read 6 tweets
Oct 21
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

17.0% BA.5.2.1
10.8% BA.5.2
10.7% BA.4.6
6.9% BA.5.1
2.7% BF.7
2.6% BF.10
2.5% BA.5.5
2.2% BQ.1
2.1% BA.5.6
2.1% BF.5

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 10/20/22
1/n
Sequence count by US State

Share of sequences with sample collection dates in the last 15 days.

2/n
15 of the 2729 sequences are from opt-in voluntary airport screening with sample collections dates in the last 15 days

3 BQ.1.1 (NY, GA, CA)
1 BQ.1 (CA)

#MaskUp in✈️🛳️🚍🚉etc

3/n
Read 20 tweets
Oct 20
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

17.1% BA.5.2.1
10.5% BA.5.2
10.3% BA.4.6
7.0% BA.5.1
2.6% BA.5.5
2.6% BF.10
2.5% BF.7
2.4% BQ.1.1
2.1% BQ.1
2.1% BF.5

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 10/19/22
1/n
Sequence count by US State

Share of sequences with sample collection dates in the last 15 days.

2/n
21 of the 3203 sequences are from opt-in voluntary airport screening with sample collections dates in the last 15 days

3 BQ.1.1 (NY, GA, CA)
2 BQ.1 (NY, CA)
2 BM.1.1 (NJ)

#MaskUp in✈️🛳️🚍🚉etc

3/n
Read 18 tweets

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