Thread by @RajlabN

#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

69.3% XBB.1.5
4.0% XBB.1.5.15
2.6% XBB.1.9.1
1.6% XBB.1.5.13
1.4% BQ.1.1
1.3% XBB.1.5.1
1.3% XBB.1.5.17
1.2% XBB.1.16

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7
Updated: 03/25/2023

1/n

Sequence count by US State

#California and #NewYork have submitted a big share of sequences with specimen collection dates on or after 03/10/2023

XBB.1.5 is still at the top spot;
followed by XBB.1.5.15 & XBB.1.9.1

2/n

Granular details -#VariantDashboard #USA #15DayTrends

XBB.1.5* (VOI - @WHO) is still ahead of the other lineages!

3/n

.@CDCgov updated variant proportions estimates on 03/24/2023 (updated every Friday)

XBB.1.9.1 (parent of EG.1*) makes an entrance!

Prudent to start separately tracking XBB.1.5.13 (parent of EK.1* and EK.2*) and XBB.1.16

https://twitter.com/RajlabN/status/1639272802111954946

4/n

Predicted Immune Escape and ACE2 binding of top lineages in USA (relative to BA.2)

Bivalent boosters (OG/Omicron.BA.5) will potentially protect the boosted from getting severe disease/hospitalizations. Get updated if you haven't already!

public.tableau.com/app/profile/ra…

5/n

USA Airport surveillance update #15DayTrends

111 sequences from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia)

*Includes pooled swabs; Many bad QC seqs

6/n

#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…

[Looks like data entry error in DE hospital data]

7/n

#COVID19 #Hospitalizations in the #UnitedStates

>60 yr old & immunocompromised
Have a good look at
@CDCgov
info on #Boosters!

#Ventilate Indoor spaces

Sick? --> Wear a good quality #Mask!

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…

8/n

Circulating recombinant lineages - USA #15DayTrends

XBB.1.5* is still the top recombinant in circulation!

9/n

Status of the latest #COVID19 Wave in #California

Slight increase in hospitalizations

Top circulating lineages in CA (#15DayTrends)

XBB.1.5 (65.2%)
XBB.1.5.15 (6.7%)
XBB.1.9.1 (6.3%)
XBB.1.16 (2.5%)
XBB.1.5.13 (2.2%)
BQ.1.1 (1.9%)
XBB.1.9.2 (1.3%)

10/n

Status of the latest #COVID19 Wave in #NewYork

Top circulating lineages in NY (#15DayTrends)

XBB.1.5 (68.7%)
XBB.1.5.15 (6.9%)
XBB.1.5.1 (2.4%)
XBB.1.5.17 (2.4%)
XBB.1.5.13 (2.0%)
XBB.1.5.16 (2.0%)
BQ.1.1 (1.2%)
EK.2 (1.2%)
..
XBB.1.16 (0.4%)

11/n

Status of the latest #COVID19 Wave in #Washington

Slight increase in hospitalizations!

Top circulating lineages in WA (#15DayTrends)

XBB.1.5 (53.3%)
XBB.1.5.15 (11.1%)
XBB.1.9.2 (11.1%)
CH.1.1 (4.4%)
BQ.1.1.10 (2.2%)
BQ.1.1.63 (2.2%)

[low sequence count]

12/n