A thread on the modelling and analysis used to suggest scenarios for what *could* happen if we do nothing. And commentary on this slide.
The slides that were presented in the Number 10 press conference on 31 October are here:
gov.uk/government/pub…
Firstly, commentary on the modelling. Modelling for Covid-19 is performed by a number of academic groups around the country. They use different modelling techniques. Some of these models are used to come up with the R value.
Firstly, the SPI-M *medium term* modelling.

From assets.publishing.service.gov.uk/government/upl…

"These projections represent SPI-M-O’s best assessment of the potential trajectory of the epidemic over the next six weeks, based on current trends and the data available up to 26th October. ...
"The projections are not forecasts or predictions. They represent a scenario in which the trajectory of the epidemic continues to follow current trends and do not account for the impact of future policy or behaviour changes."

Note this is *a scenario"
"The delay between infection, developing symptoms, hospitalisation and death means the projections cannot fully reflect changes in transmission that might have occurred over the past two to three weeks"

Some deaths are already 'baked into' the system
SPI-M-O has a number of groups that each perform their own modelling and produce a projection (a projection being looking forward from the time of their analysis).

But how do we know the modelling is 'good'?
Well, we can look at how the models have performed when they were projections, and see how their model matched up against the (actual, not modelled) *data*.
Look at this projection produced on 6 October. Red lines are what was known when the model was produced. The blue area shows a *range* of the projection going forward. The data (produced after the model was run) tracks the blue line/range very well.
The projection of 27 October shows the modelled trajectory. Note that these look mild, but they are plotted on a *log scale*. That means small increases on the graph are large increases in reality.
The other type of projection done by SPI-M is *longer term* winter forecasts. Think of them as longer term weather forecasts. These can be used for planning.
"These models generated a range of possibilities describing what might happen in a worst case scenario under the assumption of no further policy changes and increased seasonal contact patterns.
"HM Government requires estimates of the future epidemic that allow for short, medium, and longer-term planning for a range of operational and policy purposes.

Note that HMG requires these estimates.
These are the assumptions used in these medium term models:

"R estimates were in the range 1.3 to 1.5 at the start of these scenarios, with different prevalence of infection in different age groups.
"• To reflect a deterioration of the circumstances over the winter, modelling groups included some seasonal changes through the months of November, December, and January; for example, increased contacts between people leading to approximately a 10% increase in transmission.
"• No additional mitigations beyond those in place in early October were modelled. These scenarios therefore did not include the subsequent introduction of the system of medium, high, and very high tiers, i.e. local COVID-19 alert levels.
"• All models assume complete and permanent immunity to the virus after infection. The peak seen is a result of depletion of susceptible individuals in the population in the context of the current R value. ...
"The peak is determined by the combination of immunity, behaviours, and intervention; its timing and size are very sensitive to these assumptions.
These are the projections performed between 9 - 19 October by various groups including Cambridge/PHE, Imperial College, LSHTM, and Warwick.

These are *extremely* competent groups.
You will see on that chart several things. First note that these are not precise predictions - they show preparatory work for one set of potential scenarios. All models have assumptions. And we are told what these are.
What you can see is that each of these independent groups has their own projection. You can also see that there is not a central line, but a *range* of the projection (the shaded areas).

*All* of the models project with confidence that the first wave peak will be exceeded
There was an earlier projection made by the Academy of Medical Sciences on 14 July that projected double the number of deaths in the first wave.

More on that here:
All models have assumptions. There are things outside the model - exogenous factors.

For example, we have seen the abandonment of the Contain framework
And we have also seen that Tier levels that were due to be imposed are now not imposed, for example West Yorkshire was due to go into Tier 3 on Monday, but that also didn't happen.

bbc.co.uk/news/uk-englan…
We also saw this slide from the NHS. It's a complex slide which I discuss here:
And it is worth noting that SAGE advocated a circuit breaker on 21 September which could have coincided with half term, increasing the effectiveness of #Lockdown2

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More from @Dr_D_Robertson

6 Nov
The updated SPI-M slides - a short thread on what's changed.

On 31 September, in a hastily arranged press conference, the Chief Scientific Adviser presented these two slides, showing projections for hospital admissions and deaths.

These were subsequently revised ImageImage
The first slide shows a *projection* for hopsital admissions. On the left, the oringial slide, on the right, the amended slide.

These slides present a *range* of the projection (the shaded blue area), and a central projection (the dark blue line). ImageImage
The upper level for the range of the projection has changed but *the central projection* (the dark blue line) *has not changed*
Read 6 tweets
5 Nov
Public Health England have published their Covid-19 surveillance report for week 45 relating to data from week 44 (26 Oct - 1 Nov)

assets.publishing.service.gov.uk/government/upl…

"Surveillance indicators suggest that COVID-19 activity at a national level has increased or remained high during week 44.
"Positivity rates were highest in the 80+ year olds tested through both Pillar 1 (NHS and PHE testing) and in the 10 to 19 year olds tested through Pillar 2 (community testing)."

(positivity indicates whether enough testing is being done)
Levelling off in Pillar 2 cases. However, this is due to testing capacity issues &/or not enough people coming forward.

Positivity in Pillar 2 unacceptably high (not enough testing) Image
Read 16 tweets
5 Nov
Day 1 of #Lockdown2.

This is not as stringent a lockdown as before - children are still at school (which has benefits for the children), and people are less apprehensive than the first lockdown.
The lockdown was announced in advance, and we have seen people go to shops yesterday in great numbers to ensure they have the products they want.

And yesterday was seen by some as the last chance for a gathering.

Both these things will have increased transmission.
Due to the less stringent measures this time around, it will mean that it will take longer for the incidence of the virus to reduce. (We could have timed measures around the half term holiday, which would have meant that the measures were more effective).
Read 6 tweets
2 Nov
Right then. A little thread about 'focused protection'.

Focused protection appears to be the new 'herd immunity', rebranded to sound nice and comforting.

Problem is, it's anything but.

Here's some background to where the term came from.
bmj.com/content/371/bm…
We *already* have 150 cases per 100,000 in the over-80s. That's hundreds of deaths in the coming weeks.

There were fewer than 10 cases per 100,000 in the over-80s in August. So that's a 16-fold increase, which works out as doubling every 2 weeks.
There's also some discussion about the 82-year-old - the median age for people dying from Covid.

Read this thread - those 82-year-olds can be expected to reach 90 if they don't catch Covid.

Read 4 tweets
28 Oct
Let's take a little review of where we are with UK Covid restrictions.

It wasn't meant to be like this.

A Thread.

With apologies to Nandos.
It wasn't meant to be like this. Remember the Alert Levels (the 'Nandos chart')? The whole idea of that was to set some sort of policy - a roadmap if you will - of how we get out of a national lockdown.

Introducing... Covid Alert Levels. 12 May

gov.uk/government/pub…
Remember this? The gentle ski slope of calm.

'R less than 1 caseload decreasing'

Ah, simpler times.
Read 18 tweets
28 Oct
As a society, we are so divorced from the mechanisms of death that we are forgetting that the people dying of Covid are parents, siblings, grandparents. It is all too easy too look at statistics and be removed from the real lives that are cut short from this dreadful disease
A journalist has just deleted their tweet saying that the average age of those dying from Covid is 82, as if in some way that reduces the tragedy of that individual death.
And to refute the belief that it's 'only' old people - these are the people dying from Covid in the second wave (from @PHE_uk).

Over 1,000 70-somethings
Hundreds of 50-60 year olds and 60-70 year olds

Scores of 40-somethings
Read 6 tweets

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