THREAD
I created a simple table to illustrate the individual impact of the "flexible second dose timing" now recommended in the UK.

Coincidentally, @bob_wachter & @ashishkjha just tackled the US policy question in this important piece. 1/
I based this on recent statements from the UK chief medical officers, JCVI, and what we know from prior vaccine development. 2/

JCVI: app.box.com/s/iddfb4ppwkmt…

UK Chief Medical Officer (CMO) statement: gov.uk/government/new…

CMO letter to the profession: gov.uk/government/pub…
This table and thread focuses on the AZ vaccine, where more data on a delayed second dose is available than with the Pfizer vaccine. It is not intended to address questions about single-dose regimens or mix & match approaches. 3/
In the table, persons “A” and “B” both receive their first dose in January. “A” receives their second dose in February (4 weeks later), and “B” receives their second dose in April (12 weeks later). “C” receives their first dose in April and second dose in May (4 weeks later). 4/
I made a qualitative comparison the potential efficacy during the two months between “A” and “B’s” second dose, as well as the potential longer-term efficacy after “B” receives their second dose. 5/
For the two-month period between the timing of “A” and “B’s” second dose, the level of protection for “A” may be greater than “B,” as “A” has received their second dose, although JCVI suggests that most of this early protection is provided by the first dose. 6/
JCVI says first-dose protection against hospitalization is high, so for that two month interval, I’ve assumed “B” is expected to be protected against the more severe forms of COVID-19 (“+”). 7/
After “B’s” second dose in April, we expect a more robust, higher quality and longer-lasting immune response than “A,” as is often seen with longer intervals in a primary vaccination series and supported by AZ’s data immunogenicity data. 8/
The bottom line is that “A” may see some protective benefit over “B” for two months (although “B” is expected to be protected against severe COVID during that time), but “B” is expected to have better long-term protection after they receive their second dose at 12 weeks. 9/
In other words, for the two months between “A” and “B’s” second dose: A>B>C

For the longer term, after “B” receives their second dose: B>A=C

10/
At a population level, this strategy could double the number of people immunized immediately while production ramps up. Many in category “C” could shift to “B.”

This assumes immunization programs are keeping up with the number of doses available. 11/
A few important caveats: (1) the assumption of sustained efficacy after the first dose is based on an exploratory analysis in the age 18-55 population. This needs to be confirmed in the older adult population. Exploratory analyses have limitations, esp if not pre-specified. 12/
(2) the assumption that a longer schedule (“B”) will result in a higher-quality, more durable immune response is based on immunogenicity data and experience with other vaccines. The efficacy impact will have to be confirmed. 13/
(3) we need to confirm that vaccine protection against the new strain is comparable after the first and second doses, given the affinity maturation expected with a second dose. 14/
Some virologists have raised the theoretical concern that a change in schedule could promote emergence of vaccine escape mutants. This is an important consideration that has implications for single-dose vaccine development and WHO’s minimum vaccine efficacy threshold of 50%. 15/
Again, this illustration is based on statements from UK authorities, AZ’s published data, and what is known from prior vaccine development. It is not a prediction of the future or what will happen to any individual, and is subject to updates as new data becomes available. 16/
I hope this helps people understand the practical ramifications of the UK recommendations and the pros/cons at individual and population levels. The urgency of the question is driven by the emergence of the new variant in the UK as well as the limited supply of vaccine. 17/
Thanks to our vaccine CMO, Dr. Gary Dubin for his input. More thoughts and links to others' views in the thread below.

I went through this exercise to clarify my own views and thought others might find it useful. Please take it in that spirit! 18/

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More from @rvenkayya

1 Jan
THREAD
There’s much debate around the UK's recommended use of the AZ vaccine with a two-dose schedule and flexible timing of second dose. Some thoughts on the AZ recommendation (not Pfizer) based on available data with refs to some excellent threads. 1/
UK’s MHRA and JCVI are highly-experienced in vaccine assessments and recommendations, and they've surely weighed the benefits & risks of this recommendation carefully. That said, it would be good to see all the data underpinning their recommendation. 2/
In general, vaccines should be taken on a schedule tested in an efficacy trial. But it wasn’t possible to conduct the typical dose and schedule optimization prior to these Ph3 trials, and those trials provided valuable data to inform these recommendations. 3/
Read 14 tweets
28 Dec 20
THREAD
As scientists race to understand the new COVID variants, we have a valuable tool at hand: multiple ongoing Phase 3 vaccine trials. These can provide valuable insights into vaccine protection as well as the natural epidemiology of the variants via the placebo arms. 1/
The first indication of whether vaccine protection is affected will come from the lab: neutralization studies assessing whether vaccine-induced antibodies are as effective at neutralizing the new variant as earlier strains of SARS-CoV-2. Similar activity will be reassuring. 2/
But neutralization assays only assess the antibody contribution to protection, and they won’t measure transmissibility of the new variant. Animal models can provide some information, but definitive answers will only come from clinical and epi studies. 3/
Read 11 tweets
12 Dec 20
I've participated in some great discussions on #COVID19 and #vaccines on #Clubhouse recently. I’ll use this thread to share some references I’ve mentioned and/or plan to bring up in future rooms. @joinClubhouse 1/

@JorgeCondeBio
First up is a new tool from @bhrenton that tracks #CovidVaccine allocations to US states, and *some* distribution sites, based on publicly-available sources and pending a federal tracking website. 2/

Next up is a link to the Black Coalition Against Covid (@BCAgainstCOVID), which I learned about when I was on a panel with its cofounder @DrReedTuckson. It has a number of good resources including a great town hall on COVID-19 vaccine development. 3/
Read 7 tweets
6 Dec 20
THREAD

Swiss cheese is great for explaining how to slow a virus, as @MackayIM's fantastic graphic shows.

There's a history. Dr. Carter Mecher first applied Swiss cheese to pandemics in 2006 at the White House. I told the story @statnews in April. 1/

statnews.com/2020/04/24/swi…
Carter came across James Reason's work in human failures and complex systems when he worked on patient safety at the Dept of Veterans Affairs.

Swiss cheese was a good way to explain the power of early coordinated NPIs in a pandemic, which was called "community mitigation." 2/
Community mitigation came out of @DrRHatchett's work to understand the impact of combined NPIs. In 2006 Richard commissioned NIH-funded MIDAS modelers (3 groups) to model NPIs at different points in time. 3/

@PNASNews @betzhallo @neil_ferguson @ilongini

pnas.org/content/105/12…
Read 6 tweets
1 Dec 20
Fully agree that a human challenge trial *would not* have resulted in an authorized/approved vaccine any sooner.

Disagree that every smart person was recommending a human challenge trial to speed up the approval process. 1/
It is not a simple undertaking to establish a human challenge model, particularly with a novel virus for which the pathophysiology is not well-understood and where a targeted therapeutic is not available for what could be a lethal disease. 2/
Safety is obviously a major issue to be worked out, and this is tightly linked to ethical considerations. Beyond this, it takes time to determine the baseline infection/disease parameters that you hope to modify with the vaccine. 3/ thelancet.com/journals/lanin…
Read 6 tweets
29 Nov 20
@bnallamo Fair question. Here are a few thoughts from a non-regulator. First, @US_FDA, led by Peter Marks and Operations Warp Speed, led by Moncef Slaoui, recognize that every day matters for HCWs and high-risk groups and are moving with extraordinary speed. 1/
@bnallamo @US_FDA An EUA (Emergency Use Authorization) for a vaccine is not the same as a therapeutic, given that the vaccine is being given to subgroups of people who are “healthy” and may or may not be exposed to the virus. The bar for safety & efficacy data is therefore higher than for Rx. 2/
@bnallamo @US_FDA The dataset is very large (44K participants), and thorough analyses of safety & efficacy take time. Moreover, the studies aren’t powered to conclude efficacy in the subgroups being considered for EUA, yet convincing benefit-risk assessments for those groups need to be shown. 3/
Read 10 tweets

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