Raj Rajnarayanan Profile picture
Jul 1 12 tweets 16 min read
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

42.18% BA.2.12.1**,
25.49% BA.5^^,
12.44% BA.4^^,
7.05% BA.2,
5.04% BA.5.1^^,
3.79% unassigned and
0.86% BA.2.9

**S:L452Q; ^^S:L452R/F486V

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 6/30/22
#OmicronVariantUpdates #UnitedStates 06/30/22

Top 5 lineages:
BA.2.12.1, ⬇️ (Spike: L452Q)
BA.5, ⬆️ (Spike: L452R)
BA.4 ↔️ (Spike: L452R)
BA.2 ⬇️
BA.5.1 ⬆️👀 (Lineage prevalent in #Portugal)

* includes recently designated BA.2.x.y and undesignated BA.2s
BA.5*/BA.4* hotspots - #UnitedStates #15DayTrends

All eyes on #NewYork!
#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…
#COVID19 #Hospitalizations in the #UnitedStates (filtered to last 90 days)

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…
#COVID19 #Cases and #Deaths - US States (
@CDCgov data)

Tracker: public.tableau.com/app/profile/ra… #15DayTrends 👇👇👇
Tracking #circulating #variants in New York (#Bellwether state) #15DayTrends

Spike L452R > L452Q

Top circulating lineages:
40.1% BA.2.12.1
29.4% BA.5 <<<
14.1% BA.4 <<<
7.3%BA.5.1 👀<<
4.2% BA.2

#MaskUP #NewYork
#COVID19 #Hospitalizations in #NewYork

Do not let your guard down! #MaskUP!!

Closely monitoring hospitalizations in #NY!

BA.2.12.1* (L452Q)⬇️
BA.5*⬆️
BA.4* ⬆️
Status of #COVID19 wave in #Florida

Get #Boosted and #MaskUP!
Status of #COVID19 wave in #Texas
Status of #COVID19 in #California

• • •

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More from @RajlabN

Jul 2
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

39.95% BA.2.12.1**,
26.82% BA.5^^,
12.74% BA.4^^,
6.33% BA.2,
5.56% BA.5.1^^,
4.85% unassigned &
0.78% BA.2.9

**S:L452Q; ^^S:L452R/F486V

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 07/01/22 Image
#OmicronVariantUpdates #UnitedStates 07/01/22

Top 5 lineages:
BA.2.12.1, ⬇️ (Spike: L452Q)
BA.5, ⬆️ (Spike: L452R)
BA.4 ⬆️ (Spike: L452R)
BA.2 ⬇️
BA.5.1 ⬆️👀 (Lineage prevalent in #Portugal)

* includes recently designated BA.2.x.y and undesignated BA.2s Image
BA.5*/BA.4* hotspots - #UnitedStates #15DayTrends ImageImageImageImage
Read 12 tweets
Jul 1
Greater than Titan!

Seems like BA.2.75 has the potential to outcompete BA.5*/BA.4* and other circulating BA.2 lineages

Early days but growth advantage will be clear in a couple of weeks. Image
Growth advantage estimates BA.2.75 vs BA.5*:

cov-spectrum.org/explore/India/…
Growth advantage estimates BA.2.75 vs BA.2.38*:

cov-spectrum.org/explore/India/…
Read 6 tweets
Jun 30
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

42.63% BA.2.12.1**,
24.97% BA.5^^,
12.82% BA.4^^,
7.48% BA.2,
5.13% BA.5.1,
2.93% unassigned and
1.04% BA.2.9

**S:L452Q; ^^S:L452R/F486V

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 6/29/22
#OmicronVariantUpdates #UnitedStates 06/29/22

Top 5 lineages:
BA.2.12.1, ⬇️ (Spike: L452Q)
BA.5, ⬆️ (Spike: L452R)
BA.4 ⬆️ (Spike: L452R)
BA.2 ⬇️
BA.5.1 ⬆️👀 (Lineage prevalent in #Portugal)

* includes recently designated BA.2.x.y and undesignated BA.2s
BA.5*/BA.4* hotspots - #UnitedStates #15DayTrends

All eyes on #NewYork!
Read 12 tweets
Jun 29
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

43.89% BA.2.12.1**,
23.48% BA.5^^,
12.63% BA.4^^,
7.82% BA.2,
5.22% BA.5.1^^,
2.54% unassigned and
1.18% BA.2.9

**S:L452Q; ^^S:L452R/F486V

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 6/28/22 Image
#OmicronVariantUpdates #UnitedStates 06/28/22

Top 5 lineages:
BA.2.12.1, ⬇️ (Spike: L452Q)
BA.5, ⬆️ (Spike: L452R)
BA.4 ⬆️ (Spike: L452R)
BA.2 ⬇️
BA.5.1 ⬆️👀 (Lineage prevalent in #Portugal)

* includes recently designated BA.2.x.y and undesignated BA.2s Image
BA.5*/BA.4* hotspots - #UnitedStates #15DayTrends

All eyes on #NewYork! ImageImage
Read 12 tweets
Jun 28
CDC #NOWCAST Variant Proportions Predictions
- #USA (6/25/22)

42% BA.2.12.1 (S:L452Q)⬇️
36.6% BA.5 (S:L452R/F486V) ⬆️ 👀
15.7% BA.4 (S:L452R/F486V)⬆️
5.7% BA.2⬇️

Get #Boosted and #MaskUp

Source: covid.cdc.gov/covid-data-tra

@CDCgov ImageImage
Variant Proportions - a closer look at the top circulating lineages in USA and HHS regions 1-10

BA.2.12.1 has peaked in all the HHS regions reporting

BA.2 has been outcompeted

BA.5 is surging in all HHS regions Image
Read 4 tweets
Jun 28
#COVID19 #VariantDashboard - #Arkansas

>> BA.5 cases (Spike L452R) is the dominant circulating lineage in Arkansas <<

Sequence Count -ALL: 16,577 (+1)
Sequence Count - Omicron: 4531 (+1)
% of SARSCoV2 samples sequenced: 1.92%

public.tableau.com/app/profile/ra…

Updated on 6/27/2022
#COVID19 #VariantDashboard - #Arkansas

Variant Proportions (June 2022):
52.3% BA.5 (Spike L452R)
29.6% BA.2.12.1 (Spike L452Q)
12.5% BA.2
3.4% BA.2.12
2.3% BA.2.18 (Spike K417T)
Read 4 tweets

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