Thread by @RajlabN

#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

38.6% XBB.1.5
16.3% BQ.1.1
6.5% XBB.1
5.1% BQ.1
1.7% BQ.1.1.4
1.5% CH.1.1
1.4% BQ.1.1.32
1.3% BQ.1.3
1.2% BQ.1.1.5

Tracker: tinyurl.com/mryj4uu7
Updated: 02/01/2023

1/n

Sequence count by US State

#California and #NorthCarolina have submitted a big share of sequences

XBB.1.5 stays strong at the top spot and is establishing a clear foot print outside NE USA!

2/n

USA Airport surveillance update #15DayTrends

82 sequences from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia)

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Granular details -#VariantDashboard #USA #15DayTrends

XBB.1.5 is surging ahead, leaving the rest of the swarm behind!

4/n

.@CDCgov updated variant proportions estimates on 01/27/2023 (updated every Friday)

CH.1.1 makes an entry @ 1.5% in the CDC Variant Dashboard

XBB.1.5 is leading at the top!

https://twitter.com/RajlabN/status/1618990748824932355

5/n

Top circulating #SARSCOV2 lineages around the world 01/12 to 02/01/23 (#20DayTrends):

BQ.1.1 (18.1%)
XBB.1.5 (14.4%)
CH.1.1 (6.2%)
BQ.1 (3.2%)
BQ.1.9 (2.2%)
XBF (2.2%)
BA.5.2.48 (2.2%)
XBB.1 (2.1%)
BF.7 (1.9%)
CH.1.1.1 (1.7%)
BQ.1.1.20 (1.3%)
BN.1 (1.3%)
BQ.1.1.4 (1.2%)

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Predicted Immune Escape and ACE2 binding of top lineages in USA (relative to BA.2)

Bivalent boosters (OG/Omicron.BA.5) will potentially protect the boosted from getting severe disease/hospitalizations.

Please get #boosted ASAP!

public.tableau.com/app/profile/ra…

7/n

#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…

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#COVID19 #Hospitalizations in the #UnitedStates

Please get #boosted (especially > 50 yr old and immune compromised) and #MaskUP!

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…

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Status of the latest #COVID19 Wave in #NewYork

XBB.1.5 is still the top circulating lineage in NY

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Circulating recombinant lineages - USA #15DayTrends

XBB.1.5 is still the top recombinant in circulation!

11/n

Tracking circulating #SARSCoV2 lineages, Cases, #COVID19 #hospitalizations 👀 in #California

XBB.1.5 is the top circulating lineage in CA

Top circulating lineages

XBB.1.5 (24.9%)👀
BQ.1.1 (16.3%)
XBB.1 (6.4%)
BQ.1.1.32 (5.1%)
BQ.1.28 (4.1%)
BQ.1 (3.5%)

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Tracking circulating #SARSCoV2 lineages, Cases, #COVID19 #hospitalizations 👀 in #Arizona

Only 12 sequences with sample collection dates in the last 15 days

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Tracking circulating #SARSCoV2 lineages, Cases, #COVID19 #hospitalizations in #Texas

XBB.1.5 is the top circulating lineage in TX

Top circulating lineages

XBB.1.5 (27.1%)👀
BQ.1.1 (22.9%)
XBB.1 (15.6%)
BQ.1.1.4 (5.2%)
BQ.1 (3.1%)

14/n

Tracking circulating #SARSCoV2 lineages, Cases, #COVID19 #hospitalizations in #NorthCarolina

XBB.1.5 is the top circulating lineage in NC

Top circulating lineages

XBB.1.5 (45.1%)👀
BQ.1.1 (17.3%)
BQ.1 (5.1%)
XBB.1 (4.2%)
BQ.1.2 (3.2%)

15/n

Tracking circulating #SARSCoV2 lineages, Cases, #COVID19 #hospitalizations in #Illinois

BQ.1. and XBB.1.5 are the top circulating lineage in IL

Top circulating lineages

BQ.1. (27.5%)
XBB.1.5 (26.9%)👀
CH.1.1 (6.0%)

[low sequence counts]

16/n

Tracking circulating #SARSCoV2 lineages, Cases, #COVID19 #hospitalizations in #Florida

XBB.1.5 is the top circulating lineage in FL

Top circulating lineages

XBB.1.5 (33.7%)👀
BQ.1.1 (16.6%)
XBB.1 (14.4%)

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