Share this page!

Enter Twitter Thread URL to Unroll

Needs to be the full URL like: https://twitter.com/threadreaderapp/status/1644127596119195649

How to get URL link on Twitter App

  1. On the Twitter thread, click on or icon on the bottom
  2. Click again on or Share Via icon
  3. Click on Copy Link to Tweet
  4. Paste it above and click "Unroll Thread"!
  5. More info at Twitter Help
Raj Rajnarayanan Profile picture
@RajlabN
Jun 3 • 8 tweets • 9 min read Twitter logo Read on Twitter
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#21DAYTRENDS*):

28.4% XBB.1.5
8.1% XBB.1.16
4.4% XBB.1.16.1
4.4% XBB.1.9.1
3.3% EU.1.1.1
2.8% XBB.1.9.2

[Includes ~42% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 06/02/23

1/n
Sequence count by US States

A total of 999 sequences were submitted with specimen collection dates on or after 05/12/2023 (of which 421 were collected via airport surveillance)

2/n Image
Sequences from Airport Surveillance -

@CDCgov Traveler Based Surveillance Program [Currently at 7 international airports from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia)]

3/n Image
.@CDCgov updated variant proportions estimates on 05/26/2023 (updated every other Friday)

Nowcast moves to 2-week estimates



4/n
#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…

5/n
#COVID19 #Hospitalizations in the #UnitedStates

>60 yr old & immunocompromised Have a good look at @CDCgov info on #Boosters!

#Ventilate Indoor spaces

Sick? --> Wear a good quality #Mask!

Hospital Tracker (by States, by age group):public.tableau.com/app/profile/ra…

6/n
Status of the #COVID19 in #NewYork (#Bellwether State)

XBB.1.5 is still the top circulating lineage in NY (#21DayTrends)

>> includes airport surveillance sequences <<

Hospital data from @HealthNYGov

7/n ImageImage
How the End of the COVID Public Health Emergency (#PHE) May Affect You

H/T @DohenyKathleen @WebMD
webmd.com/covid/news/202…


8/n

• • •

Missing some Tweet in this thread? You can try to force a refresh
　

Keep Current with Raj Rajnarayanan

Raj Rajnarayanan Profile picture

Stay in touch and get notified when new unrolls are available from this author!

Read all threads

This Thread may be Removed Anytime!

PDF

Twitter may remove this content at anytime! Save it as PDF for later use!

Try unrolling a thread yourself!

how to unroll video
  1. Follow @ThreadReaderApp to mention us!

  2. From a Twitter thread mention us with a keyword "unroll"
@threadreaderapp unroll

Practice here first or read more on our help page!

More from @RajlabN

Raj Rajnarayanan Profile picture
Jun 4
Tracking #SARSCoV2 #Lineages - Globally

Top lineages -#20DayTrends (#G20):

XBB.1.5 (16.5%)⬇️
XBB.1.16 (10.5%)⬆️
XBB.1.9.1 (7.3%)
FL.4 (4%)
EG.1 (3.6%)
XBB.1.16.1 (3.4%)
XBB.1.9.2 (3.2%)
XBB.2.3.2 (2.6%)
FL.2 (2.5%)
FU.1 (2.1%)

public.tableau.com/app/profile/ra…
Updated 6/4/23 Image
Granular details #Global #20DayTrends

This analysis includes all designated #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 05/15/2023 (6,574 sequences) Image
In Silico Immune escape and ACE2 receptor binding scores (relative to BA.2)*

Data is intended to prioritize select lineages to generate rapid laboratory experiments to gauge immune escape and ACE2 binding affinity.

[Credits in the legend] *Only Spike RBD mutations considered Image
Read 7 tweets
Raj Rajnarayanan Profile picture
Jun 2
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#21DAYTRENDS*):

29.7% XBB.1.5
8.5% XBB.1.16
5.3% XBB.1.9.1
3.8% XBB.1.16.1
3.5% EU.1.1.1
2.4% FL.4

[Includes ~43% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 06/01/23
1/n
Sequence count by US States

A total of 949 sequences were submitted with specimen collection dates on or after 05/11/2023 (of which 410 were collected via airport surveillance)

2/n Image
Sequences from Airport Surveillance

-@CDCgov Traveler Based Surveillance Program [Currently at 7 international airports from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia)]

3/n Image
Read 8 tweets
Raj Rajnarayanan Profile picture
May 25
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

31.5% XBB.1.5
11.8% XBB.1.16
5.3% XBB.1.9.1
2.5% XBB.1.16.1
2.1% FL.4
2.1% XBB.1.5.49

[Includes ~44.5% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 05/24/23

1/n Image
Sequence count by US States

A total of 527 sequences were submitted with specimen collection dates on or after 05/09/2023

2/n Image
.@CDCgov updated variant proportions estimates on 05/12/2023 (updated every other Friday)

Nowcast moves to 2-week estimates


3/n
Read 7 tweets
Raj Rajnarayanan Profile picture
May 24
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):
30.3% XBB.1.5
11.0% XBB.1.16
5.9% XBB.1.9.1
3.4% XBB.1.16.1
1.8% FL.4
1.6% EG.2
1.4% XBB.2.3.2

[Includes ~49% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 05/23/23
1/n Image
Sequence count by US States

A total of 564 sequences were submitted with specimen collection dates on or after 05/08/2023

2/n Image
.@CDCgov updated variant proportions estimates on 05/12/2023 (updated every other Friday)

Nowcast moves to 2-week estimates


3/n
Read 7 tweets
Raj Rajnarayanan Profile picture
May 23
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

37.9% XBB.1.5
9.2% XBB.1.16
4.4% XBB.1.9.1
2.8% XBB.1.16.1
2.2% XBB.1.9.2
2.0% XBB.2.3.2

[Includes ~26% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 05/22/23

1/n Image
Sequence count by US States

A total of 497 sequences were submitted with specimen collection dates on or after 05/07/2023

2/n Image
.@CDCgov updated variant proportions estimates on 05/12/2023 (updated every other Friday)

Nowcast moves to 2-week estimates

3/n
Read 7 tweets
Raj Rajnarayanan Profile picture
May 2
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

56.2% XBB.1.5
6.1% XBB.1.9.1
4.5% XBB.1.16
2.2% XBB.1.5.1
2.1% XBB.1.9.2
1.4% XBB.1.5.13
1.4% XBB.1.5.15
1.4% XBB.1.5.17

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7 Updated: 05/01/23

1/n Image
#COVID19 #VariantDashboard - #USA
[without sequences from "Airport Surveillance"]

Top lineages (#15DayTrends):

XBB.1.5 (61.7%)
XBB.1.9.1 (5.5%)
XBB.1.16 (2.4%)
XBB.1.5.1 (2.3%)
XBB.1.5.13 (1.6%)
XBB.1.5.17 (1.6%)
XBB.1.9.2 (1.6%)
XBB.1.5.15 (1.3%)
FD.2 (1%)

2/n Image
Airport sequences constitute ~12.4% of sequences with sample collection dates in the last 15 days (#15DayTrends)

Its going to be a three way race to outcompete XBB.1.5*: XBB.1.9* vs XBB.1.16* vs XBB.2.3*

As of now, XBB.1.16* family looks to over take everything else!

3/n Image
Read 17 tweets

Did Thread Reader help you today?

Support us! We are indie developers!

This site is made by just two indie developers on a laptop doing marketing, support and development! Read more about the story.

Become a Premium Member ($3/month or $30/year) and get exclusive features!

Become Premium

Don't want to be a Premium member but still want to support us?

Make a small donation by buying us coffee ($5) or help with server cost ($10)

Donate via Paypal

Or Donate anonymously using crypto!

Ethereum

0xfe58350B80634f60Fa6Dc149a72b4DFbc17D341E copy

Bitcoin

3ATGMxNzCUFzxpMCHL5sWSt4DVtS8UqXpi copy

Thank you for your support!

Follow Us on Twitter!

Send Email!

:(