Raj Rajnarayanan Profile picture
Jun 3 8 tweets 9 min read Twitter logo Read on Twitter
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#21DAYTRENDS*):

28.4% XBB.1.5
8.1% XBB.1.16
4.4% XBB.1.16.1
4.4% XBB.1.9.1
3.3% EU.1.1.1
2.8% XBB.1.9.2

[Includes ~42% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 06/02/23

1/n
Sequence count by US States

A total of 999 sequences were submitted with specimen collection dates on or after 05/12/2023 (of which 421 were collected via airport surveillance)

2/n Image
Sequences from Airport Surveillance -

@CDCgov Traveler Based Surveillance Program [Currently at 7 international airports from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia)]

3/n Image
.@CDCgov updated variant proportions estimates on 05/26/2023 (updated every other Friday)

Nowcast moves to 2-week estimates



4/n
#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…

5/n
#COVID19 #Hospitalizations in the #UnitedStates

>60 yr old & immunocompromised Have a good look at @CDCgov info on #Boosters!

#Ventilate Indoor spaces

Sick? --> Wear a good quality #Mask!

Hospital Tracker (by States, by age group):public.tableau.com/app/profile/ra…

6/n
Status of the #COVID19 in #NewYork (#Bellwether State)

XBB.1.5 is still the top circulating lineage in NY (#21DayTrends)

>> includes airport surveillance sequences <<

Hospital data from @HealthNYGov

7/n ImageImage
How the End of the COVID Public Health Emergency (#PHE) May Affect You

H/T @DohenyKathleen @WebMD
webmd.com/covid/news/202…


8/n

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More from @RajlabN

Jun 4
Tracking #SARSCoV2 #Lineages - Globally

Top lineages -#20DayTrends (#G20):

XBB.1.5 (16.5%)⬇️
XBB.1.16 (10.5%)⬆️
XBB.1.9.1 (7.3%)
FL.4 (4%)
EG.1 (3.6%)
XBB.1.16.1 (3.4%)
XBB.1.9.2 (3.2%)
XBB.2.3.2 (2.6%)
FL.2 (2.5%)
FU.1 (2.1%)

public.tableau.com/app/profile/ra…
Updated 6/4/23 Image
Granular details #Global #20DayTrends

This analysis includes all designated #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 05/15/2023 (6,574 sequences) Image
In Silico Immune escape and ACE2 receptor binding scores (relative to BA.2)*

Data is intended to prioritize select lineages to generate rapid laboratory experiments to gauge immune escape and ACE2 binding affinity.

[Credits in the legend] *Only Spike RBD mutations considered Image
Read 7 tweets
Jun 2
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#21DAYTRENDS*):

29.7% XBB.1.5
8.5% XBB.1.16
5.3% XBB.1.9.1
3.8% XBB.1.16.1
3.5% EU.1.1.1
2.4% FL.4

[Includes ~43% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 06/01/23
1/n
Sequence count by US States

A total of 949 sequences were submitted with specimen collection dates on or after 05/11/2023 (of which 410 were collected via airport surveillance)

2/n Image
Sequences from Airport Surveillance

-@CDCgov Traveler Based Surveillance Program [Currently at 7 international airports from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia)]

3/n Image
Read 8 tweets
May 25
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

31.5% XBB.1.5
11.8% XBB.1.16
5.3% XBB.1.9.1
2.5% XBB.1.16.1
2.1% FL.4
2.1% XBB.1.5.49

[Includes ~44.5% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 05/24/23

1/n Image
Sequence count by US States

A total of 527 sequences were submitted with specimen collection dates on or after 05/09/2023

2/n Image
.@CDCgov updated variant proportions estimates on 05/12/2023 (updated every other Friday)

Nowcast moves to 2-week estimates


3/n
Read 7 tweets
May 24
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):
30.3% XBB.1.5
11.0% XBB.1.16
5.9% XBB.1.9.1
3.4% XBB.1.16.1
1.8% FL.4
1.6% EG.2
1.4% XBB.2.3.2

[Includes ~49% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 05/23/23
1/n Image
Sequence count by US States

A total of 564 sequences were submitted with specimen collection dates on or after 05/08/2023

2/n Image
.@CDCgov updated variant proportions estimates on 05/12/2023 (updated every other Friday)

Nowcast moves to 2-week estimates


3/n
Read 7 tweets
May 23
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

37.9% XBB.1.5
9.2% XBB.1.16
4.4% XBB.1.9.1
2.8% XBB.1.16.1
2.2% XBB.1.9.2
2.0% XBB.2.3.2

[Includes ~26% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 05/22/23

1/n Image
Sequence count by US States

A total of 497 sequences were submitted with specimen collection dates on or after 05/07/2023

2/n Image
.@CDCgov updated variant proportions estimates on 05/12/2023 (updated every other Friday)

Nowcast moves to 2-week estimates

3/n
Read 7 tweets
May 2
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

56.2% XBB.1.5
6.1% XBB.1.9.1
4.5% XBB.1.16
2.2% XBB.1.5.1
2.1% XBB.1.9.2
1.4% XBB.1.5.13
1.4% XBB.1.5.15
1.4% XBB.1.5.17

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7 Updated: 05/01/23

1/n Image
#COVID19 #VariantDashboard - #USA
[without sequences from "Airport Surveillance"]

Top lineages (#15DayTrends):

XBB.1.5 (61.7%)
XBB.1.9.1 (5.5%)
XBB.1.16 (2.4%)
XBB.1.5.1 (2.3%)
XBB.1.5.13 (1.6%)
XBB.1.5.17 (1.6%)
XBB.1.9.2 (1.6%)
XBB.1.5.15 (1.3%)
FD.2 (1%)

2/n Image
Airport sequences constitute ~12.4% of sequences with sample collection dates in the last 15 days (#15DayTrends)

Its going to be a three way race to outcompete XBB.1.5*: XBB.1.9* vs XBB.1.16* vs XBB.2.3*

As of now, XBB.1.16* family looks to over take everything else!

3/n Image
Read 17 tweets

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