Someone found in a #Moderna patent from 2017 a short nucleotide sequence that is identical to the one encoding for the Furin Cleavage Site in SARS-CoV-2. While this may seem suspicious at first sight, I'll try to explain why there's "nothing to see here". 1/
First of all, the nucleotide sequence is really there. It is located in sequence 11652 from patent US 9587003, position 2733-2751 (revers strand). The Genbank ID is KH664781. 2/
ncbi.nlm.nih.gov/nuccore/KH6647…
The Moderna patent covers "modified polynucleotides for the production of oncology-related proteins and peptides". In other words, these are RNA molecules that are used in #cancer therapy, and were modified in order to improve the efficacy of treatment. 3/
lens.org/lens/patent/19…
Sequence 11652 is annotated as "artificial", however if we analyze it using blastx, we find an almost perfect full-length match with NP_002430.3 (MSH3), which is a human protein involved in DNA repair. Clearly it makes sense, since the patent deals with cancer therapy. 4/
Moreover, if we translate the sequence using a tool like ExPASy translate, we notice that the short sequence does not encode for PRRAR in this protein, but rather YVPAE (which is not a furin cleavage site). The translation is from 5' to 3' in frame 1. 5/
In conclusion, despite the name "Moderna", this sequence has nothing to do with furin cleavage sites, vaccines or coronaviruses. It is just an RNA molecule encoding for a human protein that, by chance, has a short stretch of nucleotides identical to SARS-CoV-2.

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More from @emmecola

24 Oct
Per chi volesse approfondire i temi trattati nel servizio di #PresaDiretta di ieri sera, ho raccolto in questo thread le fonti e i documenti principali citati in trasmissione. 🧵1/
Cominciamo dalla missione dell'#OMS a #Wuhan, all'inizio di quest'anno. Qui trovate il rapporto finale che considera "estremamente improbabile" l'incidente di laboratorio. 2/
who.int/publications/i…
Qui invece la famosa lettera scritta a @ScienceMagazine (primo autore @jbloom_lab) per chiedere di indagare tutti i possibili scenari. 3/
science.org/doi/10.1126/sc…
Read 25 tweets
25 Aug
One last thread on the origins of #SARSCoV2 before the upcoming publication of the US intelligence report. First of all, there are two things that might be even more important than the origin itself: research ethics and scientific debate. 1/
Since the beginning, some scientists working in Chinese institutions haven't been fully transparent. The history of #RaTG13 and the issues with its sequencing data, the miners pneumonia, the missing database, the pangolin CoV data. Hiding info, playing with words. Bad science. 2/
The second thing that I didn't like was the suppression of an open dialogue between scientists, which lasted for several months. Now it's easier for scientists to freely talk about the different scenarios, but do you remember how difficult it was one year ago? 3/
Read 11 tweets
5 Apr
THREAD - What happened at the Huanan #seafood market?

The @WHO report is quite clear on this point: #SARSCoV2 might have jumped from a wild animal sold in this market and maybe other markets in #Wuhan. But what do we know exactly? 1/15

#originsofSARSCoV2 Image
After all this time, the Huanan seafood market still remains the main suspect for a simple reason: most of the early cases had visited at least one market in Wuhan city, and several of them visited the Huanan market. 2/15 Image
According to the report, 10,000 people visited this place every day, making it a perfect setting for an #outbreak. One might argue: what about the cases without market exposure? Good question! 3/15
Read 16 tweets
21 Feb
Tra le #mutazioni del virus che preoccupano di più ci sono la #N501Y e la #E484K.

La prima permette a SARS-COV-2 di legarsi meglio al recettore ACE2, in altre parole i virus con questa mutazione riescono a entrare più facilmente nelle nostre cellule. 1/
Variante inglese 🇬🇧 (B.1.1.7), sudafricana 🇿🇦 (B.1.351) e brasiliana 🇧🇷 (P.1) hanno tutte quante la mutazione N501Y.

Probabilmente, è proprio per questo motivo che queste varianti tendono a essere più contagiose. 2/
La E484K, invece, aiuta il virus a sfuggire agli #anticorpi, pertanto potrebbe ridurre in parte l'efficacia dei #vaccini.

La #varianteinglese non ha questa mutazione (per ora), ma brasiliana e sudafricana sì. Per questo sono così temute! 3/
Read 11 tweets
26 Dec 20
Question for bioinformaticians! Believe it or not, the first genome of bat virus #RaTG13 had some nucleotides that were supported by zero reads: in other words, the genome didn't match the sequences that were used to assemble it. How is it possible? 1/
#originsofSARSCoV2
Assemblers are computer programs, they do not "invent" nucleotides. So, what happened here? My explanation was that this genome was assembled using other reads, maybe in addition to the ones that were uploaded. 2/
In that case, I expected the authors to upload the missing reads.. Instead they did the opposite: they updated the genome, replacing the nucleotides supported by zero reads with the correct ones. So, the question is: how the heck did they assemble the genome the first time? 3/
Read 5 tweets
20 Nov 20
Some "conspiracists" always get it right!

Conspiracist, January 2020: "#RaTG13 virus looks like BtCoV/4991 described in an old paper that you didn't cite!" 📄

Average scientist, January 2020: 😴

Shi Zhengli, July 2020: "Yes, it was the same virus."

#SARSCoV2 #SARS2origins

1/
Conspiracist, May 2020: "Look, these sequences in database are dated 2017/2018. So you didn't sequence RaTG13 this year, as you wrote in the paper!" 🔬

Average scientist, May 2020: 😴

Shi Zhengli, July 2020: "Yes, actually we got the sequence in 2018."

2/
Conspiracist, May 2020: "Have a look at these Chinese theses we found on the internet: RaTG13 was found in a #mineshaft were people died of #pneumonia!" 😱

Average scientist, May 2020: 😴

Shi Zhengli, June 2020: "Oh yes we found it there, but.. well, the cause was a fungus"

3/
Read 8 tweets

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