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Raj Rajnarayanan Profile picture
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Jan 3 • 4 tweets • 5 min read
#VariantDashboard #India - #30DayTrends

>> Low Sequence Count (n=79) <<

Top circulating lineages:

XBB.1 (14.5%)
BQ.1.1 (9.6%)
XBB.1.5 (9.6%)
XBB (8.4%)
XBB.2 (7.2%)
BQ.1 (6.0%)
BY.1 (6.0%)
BA.5.2 (3.6%)

Tracker: public.tableau.com/app/profile/ra…

Updated: 01/02/2023
Granular details - #VariantProportions #India 1/2/23

XBB* is still the dominant circulating group of lineages in India

XBB.1.5* has entered the conversation in #Maharashtra, #Gujarat and #Telangana
Variant landscape in Indian States with reported XBB.1.5* sequences #30DayTrends (#Maharashtra, #Gujarat and #Telangana)
Here's the month-wise variant info from #INSACOG

H/T @vinodscaria

Link: inda.rcb.ac.in/insacog/statre…

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More from @RajlabN

Raj Rajnarayanan Profile picture
Jan 3
#COVID19 #VariantDashboard - #UnitedStates

Holiday season - Low seq count this 15day period!

TOP lineages (#15DAYTRENDS):

35.7% XBB.1.5
13.4% BQ.1.1
8.5% BQ.1
4.1% XBB.1
2.8% BQ.1.1.4
2.6% BQ.1.1.3

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 01/02/2023

1/n
Sequence count by US State

New York has submitted a HUGE SHARE of sequences with specimen collection dates in the last 15 days.

2/n
Granular details -#VariantDashboard #USA #15DayTrends

3/n
Read 18 tweets
Raj Rajnarayanan Profile picture
Jan 2
#COVID19 #VariantDashboard - #UnitedStates

Wish everyone a Healthy New Year 2023!

TOP lineages (#15DAYTRENDS):

32.7% XBB.1.5 👀
14.6% BQ.1.1
8.9% BQ.1
4.1% XBB.1
2.5% BQ.1.1.4
2.2% XBB

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 01/01/2023

1/n
Sequence count by US State

New York has submitted a HUGE SHARE of sequences with specimen collection dates in the last 15 days.

2/n
Granular details -#VariantDashboard #USA #15DayTrends

3/n
Read 19 tweets
Raj Rajnarayanan Profile picture
Jan 1
#COVID19 #VariantDashboard - #UnitedStates

Interesting tug of war between BQ.1.1 & XBB.1.5

TOP lineages (#15DAYTRENDS):

27.0% XBB.1.5 👀
14.7% BQ.1.1
8.4% BQ.1
4.1% BQ.1.22
3.9% XBB.1
2.2% BQ.1.1.4

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 12/31/22

1/n Image
Sequence count by US State

New York has submitted a lion's share of sequences with specimen collection dates in the last 15 days.

2/n Image
Granular details -#VariantDashboard #USA #15DayTrends

3/n Image
Read 20 tweets
Raj Rajnarayanan Profile picture
Dec 31, 2022
#COVID19 #VariantDashboard - #UnitedStates

Interesting tug of war between BQ.1.1 & XBB.1.5

TOP lineages (15-DAY TRENDS):

14.8% BQ.1.1
12.8% XBB.1.5👀
10.2% BQ.1
8.2% BQ.1.22
3.0% XBB.1
2.4% BQ.1.1.4

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 12/30/22

1/n
Sequence count by US State

California, New York and Texas have submitted a huge share of sequences with specimen collection dates in the last 15 days.

[It appears like a tug of war between XBB.1.5 and BQ.1.1 mainly because of no. of sequences uploaded from West and South]

2/n
Granular details -#VariantDashboard #USA #15DayTrends

3/n
Read 19 tweets
Raj Rajnarayanan Profile picture
Dec 30, 2022
#SARSCoV2 #VariantProportions - #USA |12/30/22

Top lineages (per @CDCgov #Nowcast estimates):

40.5% XBB.1.5🚀🚀🚀👀
26.9% BQ.1.1⬇️
18.3% BQ.1⬇️
3.7% BA.5⬇️
3.6% XBB
2.4% BN.1
2.1% BF.7
0.9% BA.2.75
and others

covid.cdc.gov/covid-data-tra…

1/n
Overall trend consistent with #VariantDashboard #USA #15DayTrends



2/n
BQ.1, BQ.1.1 hotspots per nowcast estimates

3/n
Read 6 tweets
Raj Rajnarayanan Profile picture
Dec 30, 2022
Tracking XBB.1.5* lineage over time | 12/30/2022

Total Sequence Count - Global: 2,719
Total Sequence Count - USA: 2,426

Earliest sample collection date: 10/22/22 (NY, USA)*

Tracker: public.tableau.com/app/profile/ra…

* [excluding samples with date errors]
Tracking XBB.1.5* in Asia over time | 12/20/2022

3 new XBB.1.5^^ sequences uploaded from #Shanghai, #China [metadata indicates - baseline surveillance]

^^ will closely look at these sequences for some epi clues
Tracking XBB.1.5* in North America over time | 12/30/2022

#Ontario, #Canada is an emerging hotspot

New entrant: #PuertoRico
Read 4 tweets

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