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Published open access version of our workflow for non-targeted LC-MS #metabolomics is now available in @MDPIOpenAccess Metabolites! This is huge work, and I'll be breaking down some of the main parts in following tweets.👇mdpi.com/678738
The paper includes full lab protocol for performing non-targeted LC-MS #metabolomics.
There is also a description of the full #bioinformatics analysis pipeline, from preprocessing to statistics, classification, visualization and so on.
And so that everyone can perform the #bioinformatics analysis, we also introduce a new #opensource #rstats package called "notame" for performing all these steps: github.com/antonvsdata/no…
As a side bonus, we also decided to #opensource a simple #rstats based web tool called Wranglr that we've developed and been using to create worklists: github.com/antonvsdata/wr…
..And when I say "we", I mean that the work was actually done by @KatiHanhineva group from @UniEastFinland, including @antonklavus, @makokla86, @stefanianoerman, @ville_koistinen, @karkkainen_olli, @SRummukainen & co. as well as collaborators such as @BroadhurstDavid & co.
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