Raj Rajnarayanan Profile picture
Sep 26 17 tweets 16 min read
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

21.86% BA.5.2.1
12.79% BA.5.2
11.39% BA.4.6⬆️
10.89% BA.5.1
3.83% BA.5
3.55% BA.5.5
3.13% BA.5.6
3.02% BF.10
2.55% BA.5.2.9
1.59% BF.5

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 09/25/22
1/n Image
Top circulating lineages:

82.23% BA.5*
11.39% BA.4.6*
2.35% BA.4*
1.37% BF.7*
1.04% BA.2.75*
0.67% BQ.1* 👀
0.21% BQ.1.1*👀
0.18% BA.2.75.2*
0.05% BA.2.3.20*
0.05% BJ.1*

2/n Image
BA.5* group of lineages have outcompeted all other circulating lineages in the USA.

@CDCgov updated variant proportions estimates on 9/23/2022



3/n
#NewYork and #NorthCarolina are BA.4.6* (Spike R346T) hotspots

#15DayTrends

4/n Image
Status of BF.7* is USA - #15DayTrends

5/n Image
Tracking BA.2.75* (#Centaurus) over time in #USA

Closely following several newly designated BA.2.75* sub-lineages

USA Tracker: public.tableau.com/app/profile/ra…

6/n
BA.2.75.1* is the top circulating BA.2.75* lineage in the USA (#15DayTrends)

7/n Image
#LineageWatchTeam's @GenSpectrum

#Collection24 maintained by @siamosolocani/@Asinickle1

>> All eyes on BQ.1*/BQ.1.1* and BA.2.75* lineages <<

Collection24: cov-spectrum.org/collections/24…

Tracker: public.tableau.com/shared/QFBZWNX…

(#15DayTrends - #USA)

8/n Image
#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…

9/n
#COVID19 #Hospitalizations in the #UnitedStates

Please get #boosted (especially > 50 yr old and immune compromised) and #MaskUP!

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…

10/n
Closely watching #COVID19 #Hospitalizations in > 50 years old in #USA

11/n Image
Closely watching #Pediatric #COVID19 #Hospitalizations in #USA

11/n Image
#COVID19 #Cases and #Deaths - US States
- @CDCgov data

Tracker: public.tableau.com/app/profile/ra…

13/n
Status of the latest #COVID19 Wave in #NewYork #BellwetherState

Top circulating variants - BA.5.2.1 (19.6%), BA.4.6 (14.6%), BA.5.2 (13.8%)

Other key lineages
BQ.1* (0.93%)
BQ.1.1* (0.41%)
BA.2.75.2 (0.25%)

Don't let your guard down!

14/n ImageImage
Status of the latest #COVID19 Wave in #NorthEast #USA (MD, PA, DE, NY, MA, VT, CT, NJ, ME, NH, RI)

Top circulating variants - BA.5.2.1, BA.4.6 (~14%), BA.5.2

Other:
BQ.1 (1.1%)
BQ.1.1 (0.4%)
BA.2.75.2 (0.3%)

Closely watching hospitalizations.. Don't let your guard down!
15/n ImageImage
#WasteWater analytics from @BiobotAnalytics

All eyes on "Northeast USA" | (States: MD, PA, DE, NY, MA, VT, CT, NJ, ME, NH, RI)

16/n Image
.@IHME_UW projections: #COVID19 cases will trend down for a few weeks and then start surging again!

Please get #boosted ASAP!



16/n Image

• • •

Missing some Tweet in this thread? You can try to force a refresh
 

Keep Current with Raj Rajnarayanan

Raj Rajnarayanan Profile picture

Stay in touch and get notified when new unrolls are available from this author!

Read all threads

This Thread may be Removed Anytime!

PDF

Twitter may remove this content at anytime! Save it as PDF for later use!

Try unrolling a thread yourself!

how to unroll video
  1. Follow @ThreadReaderApp to mention us!

  2. From a Twitter thread mention us with a keyword "unroll"
@threadreaderapp unroll

Practice here first or read more on our help page!

More from @RajlabN

Sep 28
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

22.18% BA.5.2.1
12.64% BA.5.2
10.88% BA.4.6
10.02% BA.5.1
4.19% BA.5
3.63% BA.5.5
3.23% BA.5.6
3.04% BF.10
2.32% BA.5.2.9

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 09/27/22
1/n Image
Top circulating lineages:

82.4% BA.5*
10.9% BA.4.6*
2.7% BA.4*
1.4% BF.7*
0.8% BA.2.75*
0.7% BQ.1* 👀
0.2% BQ.1.1*👀
0.3% BA.2.75.2*
0.05% BA.2.3.20*
0.02% BJ.1*

2/n Image
.@CDCgov updated variant proportions estimates on 9/23/2022



3/n
Read 18 tweets
Sep 27
Tracking BQ* lineages (BQ.1* & BQ.1.1*) over time

Emerging Hotspots:

BQ.1* (aka #Typhon) : #USA, #UnitedKingdom, #Denmark, #Canada, #Germany

BQ.1.1* (aka #Cerberus): #UnitedKingdom, #USA, #France, #Denmark, #Belgium

Tracker: public.tableau.com/app/profile/ra…

Updated 9/27/2022 12 pm
Tracking BQ.1* (aka #Typhon)/BQ.1.1* (aka #Cerberus) in the #UnitedKingdom over time

#England is a BQ.1/BQ.1.1 hotspot!

Please get #boosted and #MaskUp!

Note: Latest Epi Weeks are incomplete ImageImage
Tracking BQ.1* (aka #Typhon)/BQ.1.1* (aka #Cerberus) in #USA over time

#Texas, #NewYork, #NewJersey, #California, #Georgia #Maryland #Connecticut are emerging BQ.1/BQ.1.1 hotspots!

Please get #boosted and #MaskUp! ImageImage
Read 4 tweets
Sep 27
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

22.33% BA.5.2.1
12.87% BA.5.2
10.53% BA.4.6
10.33% BA.5.1
3.71% BA.5
3.69% BA.5.5
3.43% BA.5.6
3.11% BF.10
2.67% BA.5.2.9
1.59% BF.5

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 09/26/22
1/n Image
Top circulating lineages:

82.62% BA.5*
10.53% BA.4.6*
2.68% BA.4*
1.45% BF.7*
0.94% BA.2.75*
0.62% BQ.1* 👀
0.20% BQ.1.1*👀
0.25% BA.2.75.2*
0.05% BA.2.3.20*
0.03% BJ.1*

2/n Image
.@CDCgov updated variant proportions estimates on 9/23/2022



3/n
Read 17 tweets
Sep 25
Lineages to watch

1. BQ.1*
2. BQ1.1*
3. BA.2.75.2*
4. XBB - Recombinant of BJ.1 and BM.1.1.1
5. BA.2.3.20

All lineages have appreciable ACE2 affinity;
1-4 are highly immune evasive;
1 & 2 evade many therapeutics - #Evusheld and #Bebtelovimab

fortune.com/well/2022/09/2…
Credits to Lineage Spotters/Proposers

BA.2.3.20 - @LongDesertTrain
BQ.1*/BQ.1.1* - @siamosolocani
BA.2.75.2 - @agamedilab
XBB - @CorneliusRoemer

and the #LineageWatch team for 24/7 tracking & monitoring

cov-spectrum.org/collections/24…
BA.2.3.20 [ ⛳️to track Convergent Mutations]

@PangoNetwork Proposal/Background

H/T @LongDesertTrain

github.com/cov-lineages/p…
Read 7 tweets
Sep 14
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

31.05% BA.5.2.1
17.11% BA.5.2
12.23% BA.5.1
9.03% BA.4.6
5.08% BA.5.5
5.03% BA.5.6
4.01% BA.5
2.19% BA.4.1
2.01% BF.5
1.50% BE.1

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 09/13/22
1/n
Top circulating lineages:

84.80% BA.5*
12.56% BA.4* [of which 9.03% BA.4.6]
0.94% BA.2.75* 👀
1.7% Others

2/n
Now the spotlight is on #Oregon, #NewHampshire, #Maine & #Maryland!

Week-over-week trend in new confirmed SARSCoV2 positive cases is >60%

Source: charts.medriva.com/us/

3/n
Read 15 tweets
Sep 13
CDC #NOWCAST Variant Proportions Predictions
- #USA (updated on 09/13/22)

87.5% BA.5* (S:L452R/F486V; M:D3N) ↔️
9.2% BA.4.6 (S:R346T)
2.2% BA.4 (S:L452R/F486V; N:P151S)
1% BA.2*
0.1% BA.2.12.1* (S:L452Q)⬇️

Get #Boosted and #MaskUp

Source: covid.cdc.gov/covid-data-tra…

@CDCgov
CDC nowcast predicts HHS Region 7 as a BA.4.6 lineage (dark blue color) hotspot
Read 4 tweets

Did Thread Reader help you today?

Support us! We are indie developers!


This site is made by just two indie developers on a laptop doing marketing, support and development! Read more about the story.

Become a Premium Member ($3/month or $30/year) and get exclusive features!

Become Premium

Don't want to be a Premium member but still want to support us?

Make a small donation by buying us coffee ($5) or help with server cost ($10)

Donate via Paypal

Or Donate anonymously using crypto!

Ethereum

0xfe58350B80634f60Fa6Dc149a72b4DFbc17D341E copy

Bitcoin

3ATGMxNzCUFzxpMCHL5sWSt4DVtS8UqXpi copy

Thank you for your support!

Follow Us on Twitter!

:(