Raj Rajnarayanan Profile picture
Oct 18 15 tweets 13 min read
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

17.4% BA.5.2.1
11.2% BA.5.2
10.1% BA.4.6
6.8% BA.5.1
2.9% BF.10
2.5% BF.7
2.4% BQ.1.1
2.3% BQ.1
2.2% BA.5.5
1.9% BF.26

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 10/18/22
1/n Image
Sequence count by US State

Share of sequences with sample collection dates in the last 15 days.

2/n Image
7 of the 3263 sequences are from opt-in voluntary airport screening with sample collections dates in the last 15 days

1 BQ.1 (NY)
1 BM.1.1 (NJ)

#MaskUp in✈️🛳️🚍🚉etc

3/n
Top circulating lineages (#15DayTrends)

74.6% BA.5*
10.1% BA.4.6*
7.2% BQ.1* (of which 2.4 BQ.1.1)
2.5% BF.7*
2.3% BA.2.75*
1.4% BA.4*
0.5% BA.2.3.20* (includes CM.2)
0.5% XBB* (includes XXB.1, XBB.2, XBB.3)

4/n Image
. @CDCgov updated variant proportions estimates on 10/14/2022 (CDC updates nowcast estimates every Friday)



5/n
The Great Convergence!

Tracked #VariantSoup with key #Spike mutations @ 346, 356, 444-446, 450, 452, 460, 486, 490, 493-494 positions

public.tableau.com/app/profile/ra…

6/n
Updates from #LineageWatchTeam's @GenSpectrum
#Collection24 maintained by @siamosolocani /
@Asinickle1

>> All eyes on BQ* lineages especially BQ.1.1*<<

Collection24: cov-spectrum.org/collections/24…

Tracker: public.tableau.com/app/profile/ra…

(#15DayTrends - #USA)
7/n Image
Immune Escape and ACE2 binding of top lineages in USA (relative to BA.2)

Bivalent boosters (OG/Omicron.BA.5) will potentially protect the boosted from getting severe disease/hospitalizations.

Please get #boosted ASAP!

public.tableau.com/app/profile/ra…

8/n
#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…

Note: Error in DE hospital data is corrected!

9/n
#COVID19 #Hospitalizations in the #UnitedStates

Please get #boosted (especially > 50 yr old and immune compromised) and #MaskUP!

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…

10/n
Closely following >50 yr old age group #COVID19 #Hospitalizations data

11/n Image
#COVID19 #Cases and #Deaths - US States
- @CDCgov data

Tracker: public.tableau.com/app/profile/ra…

12/n
Status of the latest #COVID19 Wave in #NewYork #BellwetherState

Top Lineages (#15DAYTrends):

BQ* Lineages (17.9%) 👀 ( of which 5.1% BQ.1.1*)
BA.5.2.1 (12.7%)
BA.4.6 (10.8%)

Please get #Boosted, #Ventilate and #Maskup!

13/n ImageImage
Rise of BQ.1*/BQ.1.1* is concerning

fortune.com/well/2022/09/2…

15/n

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More from @RajlabN

Oct 21
#SARSCoV2 #VariantProportions - #USA |10/21/22

@CDCgov #Nowcast estimates

BA.5*: 62.2%
BA.4.6: 11.3%
BQ.1*: 9.4%
BQ.1.1*: 7.2%
BF.7*: 6.7%
BA.2.75.2*: 1.3%

Does not include recombinant lineage XBB yet

covid.cdc.gov/covid-data-tra… Image
Read 4 tweets
Oct 21
#Omicron family swells to 500+ sublineages!

Currently, we are watching "Omicron" BQ.1.1*

Expected to outcompete other Omicrons in circulation including Omicron.BA5*

Omicron.BJ1/ Omicron.BM.1.1.1 recombinant XBB might give a tough fight to Omicron.BQ.* Image
Introducing Omicron BQ* family

All of them are Omicrons too... Omicron.BQs

- 36 of them as of now.. Image
Introducing Omicron BA.2.75* family

All of them are Omicrons too.. Omicron BA.2.75s

-69 of them as of now Image
Read 6 tweets
Oct 21
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

17.0% BA.5.2.1
10.8% BA.5.2
10.7% BA.4.6
6.9% BA.5.1
2.7% BF.7
2.6% BF.10
2.5% BA.5.5
2.2% BQ.1
2.1% BA.5.6
2.1% BF.5

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 10/20/22
1/n Image
Sequence count by US State

Share of sequences with sample collection dates in the last 15 days.

2/n Image
15 of the 2729 sequences are from opt-in voluntary airport screening with sample collections dates in the last 15 days

3 BQ.1.1 (NY, GA, CA)
1 BQ.1 (CA)

#MaskUp in✈️🛳️🚍🚉etc

3/n
Read 20 tweets
Oct 20
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

17.1% BA.5.2.1
10.5% BA.5.2
10.3% BA.4.6
7.0% BA.5.1
2.6% BA.5.5
2.6% BF.10
2.5% BF.7
2.4% BQ.1.1
2.1% BQ.1
2.1% BF.5

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 10/19/22
1/n Image
Sequence count by US State

Share of sequences with sample collection dates in the last 15 days.

2/n Image
21 of the 3203 sequences are from opt-in voluntary airport screening with sample collections dates in the last 15 days

3 BQ.1.1 (NY, GA, CA)
2 BQ.1 (NY, CA)
2 BM.1.1 (NJ)

#MaskUp in✈️🛳️🚍🚉etc

3/n
Read 18 tweets
Oct 20
Tracking #SARSCoV2 #Convergent #Lineages ( aka #VariantSoup) over time - Globally | #30DayTrends

BQ.1.1 is currently leading the charts!
Followed by BQ.1, BA.2.75.2*, XBB.1 and BA.2.3.20

Tracker: public.tableau.com/app/profile/ra…

Updated 10/19/2022 7:30 pm
Note: Tracker includes Preselected from Austria and Airport Screening from Japan and USA
Top Lineages with Convergent Mutations-

BQ.1.1
BQ.1
BA.2.75.2
XBB.1
BA.2.3.20
BN.1
BM.1.1.3
BA.2.75.5
BL.1
BQ.1.2
...

3/n Image
Read 5 tweets
Oct 19
"The fact that BQ variants are rising in the region make it a likely contender to generate a wave throughout the rest of the country"

The country can “be alerted quickly” to a coming #BQwave by looking at #NewYork data

H/T @ErinMPrater @FortuneMagazine

#Cerberus #Typhon
Newly reported #COVID19 #Hospital admissions in #NewYork Image
Read 5 tweets

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