Raj Rajnarayanan Profile picture
Oct 21 20 tweets 17 min read
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

17.0% BA.5.2.1
10.8% BA.5.2
10.7% BA.4.6
6.9% BA.5.1
2.7% BF.7
2.6% BF.10
2.5% BA.5.5
2.2% BQ.1
2.1% BA.5.6
2.1% BF.5

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 10/20/22
1/n
Sequence count by US State

Share of sequences with sample collection dates in the last 15 days.

2/n
15 of the 2729 sequences are from opt-in voluntary airport screening with sample collections dates in the last 15 days

3 BQ.1.1 (NY, GA, CA)
1 BQ.1 (CA)

#MaskUp in✈️🛳️🚍🚉etc

3/n
Top circulating lineages (#15DayTrends)

73.7% BA.5*
10.7% BA.4.6*
8.0% BQ.1* (of which 2.7 BQ.1.1*)
2.7% BF.7*
1.9% BA.2.75*
1.8% BA.4*
0.3% BA.2.3.20* (includes CM.2)
0.3% XBB* (includes XXB, XBB.1, XBB.1.1)

Total # of Lineages Circulating in USA: 176 👀

4/n
. @CDCgov updated variant proportions estimates on 10/14/2022 (CDC updates nowcast estimates every Friday)



5/n
The Great Convergence!

Tracked #VariantSoup with key #Spike mutations @ 346, 356, 444-446, 450, 452, 460, 486, 490, 493-494 positions

public.tableau.com/app/profile/ra…

6/n
Updates from #LineageWatchTeam's @GenSpectrum
#Collection24 maintained by @siamosolocani
/@Asinickle1

>> All eyes on BQ* lineages especially BQ.1.1*<<

Collection24: cov-spectrum.org/collections/24…

Tracker: public.tableau.com/app/profile/ra…

(#15DayTrends - #USA)
7/n
Immune Escape and ACE2 binding of top lineages in USA (relative to BA.2)

Bivalent boosters (OG/Omicron.BA.5) will potentially protect the boosted from getting severe disease/hospitalizations.

Please get #boosted ASAP!

public.tableau.com/app/profile/ra…

8/n
#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…

9/n
#COVID19 #Hospitalizations in the #UnitedStates

Please get #boosted (especially > 50 yr old and immune compromised) and #MaskUP!

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…

10/n
Closely following >50 yr old age group #COVID19 #Hospitalizations data

11/n
Closely following #Pediatric #COVID19 #Hospitalizations data

12/n
#COVID19 #Cases and #Deaths - US States
- @CDCgov data

Tracker: public.tableau.com/app/profile/ra…

13/n
Status of the latest #COVID19 Wave in #NewYork #BellwetherState

Top Lineages (#15DAYTrends):

BQ* Lineages (19.3%) 👀 ( of which 5.5% BQ.1.1*)
BA.5.2.1 (12.7%)
BA.4.6 (10.7%)

Please get #Boosted, #Ventilate and #Maskup!

14/n
Rise of BQ.1*/BQ.1.1* is concerning

fortune.com/well/2022/09/2…

16/n
This surge is consistent with #WasteWater analytics from @BiobotAnalytics

Big uptick in wastewater SARSCoV2 content from NE USA

Other regions are slowly increasing too
.@IHME_UW case projections - #NewYork

Universal Masking is predicted to reduce case burden significantly!
#XBB is waiting in the Que!

Now spread to over 28 countries including USA!

#NewYork is an emerging hotspot

fortune.com/well/2022/10/2…

• • •

Missing some Tweet in this thread? You can try to force a refresh
 

Keep Current with Raj Rajnarayanan

Raj Rajnarayanan Profile picture

Stay in touch and get notified when new unrolls are available from this author!

Read all threads

This Thread may be Removed Anytime!

PDF

Twitter may remove this content at anytime! Save it as PDF for later use!

Try unrolling a thread yourself!

how to unroll video
  1. Follow @ThreadReaderApp to mention us!

  2. From a Twitter thread mention us with a keyword "unroll"
@threadreaderapp unroll

Practice here first or read more on our help page!

More from @RajlabN

Oct 21
#SARSCoV2 #VariantProportions - #USA |10/21/22

@CDCgov #Nowcast estimates

BA.5*: 62.2%
BA.4.6: 11.3%
BQ.1*: 9.4%
BQ.1.1*: 7.2%
BF.7*: 6.7%
BA.2.75.2*: 1.3%

Does not include recombinant lineage XBB yet

covid.cdc.gov/covid-data-tra… Image
Read 4 tweets
Oct 21
#Omicron family swells to 500+ sublineages!

Currently, we are watching "Omicron" BQ.1.1*

Expected to outcompete other Omicrons in circulation including Omicron.BA5*

Omicron.BJ1/ Omicron.BM.1.1.1 recombinant XBB might give a tough fight to Omicron.BQ.*
Introducing Omicron BQ* family

All of them are Omicrons too... Omicron.BQs

- 36 of them as of now..
Introducing Omicron BA.2.75* family

All of them are Omicrons too.. Omicron BA.2.75s

-69 of them as of now
Read 6 tweets
Oct 20
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

17.1% BA.5.2.1
10.5% BA.5.2
10.3% BA.4.6
7.0% BA.5.1
2.6% BA.5.5
2.6% BF.10
2.5% BF.7
2.4% BQ.1.1
2.1% BQ.1
2.1% BF.5

Tracker: tinyurl.com/mryj4uu7
#OmicronUpdates 10/19/22
1/n
Sequence count by US State

Share of sequences with sample collection dates in the last 15 days.

2/n
21 of the 3203 sequences are from opt-in voluntary airport screening with sample collections dates in the last 15 days

3 BQ.1.1 (NY, GA, CA)
2 BQ.1 (NY, CA)
2 BM.1.1 (NJ)

#MaskUp in✈️🛳️🚍🚉etc

3/n
Read 18 tweets
Oct 20
Tracking #SARSCoV2 #Convergent #Lineages ( aka #VariantSoup) over time - Globally | #30DayTrends

BQ.1.1 is currently leading the charts!
Followed by BQ.1, BA.2.75.2*, XBB.1 and BA.2.3.20

Tracker: public.tableau.com/app/profile/ra…

Updated 10/19/2022 7:30 pm
Note: Tracker includes Preselected from Austria and Airport Screening from Japan and USA
Top Lineages with Convergent Mutations-

BQ.1.1
BQ.1
BA.2.75.2
XBB.1
BA.2.3.20
BN.1
BM.1.1.3
BA.2.75.5
BL.1
BQ.1.2
...

3/n
Read 5 tweets
Oct 19
"The fact that BQ variants are rising in the region make it a likely contender to generate a wave throughout the rest of the country"

The country can “be alerted quickly” to a coming #BQwave by looking at #NewYork data

H/T @ErinMPrater @FortuneMagazine

#Cerberus #Typhon
Newly reported #COVID19 #Hospital admissions in #NewYork Image
Read 5 tweets
Oct 18
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (15-DAY TRENDS):

17.4% BA.5.2.1
11.2% BA.5.2
10.1% BA.4.6
6.8% BA.5.1
2.9% BF.10
2.5% BF.7
2.4% BQ.1.1
2.3% BQ.1
2.2% BA.5.5
1.9% BF.26

Tracker: tinyurl.com/mryj4uu7

#OmicronUpdates 10/18/22
1/n Image
Sequence count by US State

Share of sequences with sample collection dates in the last 15 days.

2/n Image
7 of the 3263 sequences are from opt-in voluntary airport screening with sample collections dates in the last 15 days

1 BQ.1 (NY)
1 BM.1.1 (NJ)

#MaskUp in✈️🛳️🚍🚉etc

3/n
Read 15 tweets

Did Thread Reader help you today?

Support us! We are indie developers!


This site is made by just two indie developers on a laptop doing marketing, support and development! Read more about the story.

Become a Premium Member ($3/month or $30/year) and get exclusive features!

Become Premium

Don't want to be a Premium member but still want to support us?

Make a small donation by buying us coffee ($5) or help with server cost ($10)

Donate via Paypal

Or Donate anonymously using crypto!

Ethereum

0xfe58350B80634f60Fa6Dc149a72b4DFbc17D341E copy

Bitcoin

3ATGMxNzCUFzxpMCHL5sWSt4DVtS8UqXpi copy

Thank you for your support!

Follow Us on Twitter!

:(