Thread by @RajlabN

#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

67.7% XBB.1.5⬇️
4.5% XBB.1.16👀
4.5% XBB.1.5.15
4.1% XBB.1.9.1👀
1.7% XBB.2.3👀
1.5% XBB.1.5.13
1.0% XBB.1.5.1

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7 Updated: 04/13/23

1/n

Use "Airport Surveillance" (AS) pull-down menu to easily track variant proportions Nationally or by State with or without AS sequences

Top lineages (#15DayTrends w/o AS seqs):

XBB.1.5 (71.8%),
XBB.1.5.15 (4.3%),
XBB.1.9.1 (3.2%),
XBB.1.16 (1.9%)
XBB.1.5.13 (1.2%)

2/n

Sequence count by US States

#California, #Washington, #NewYork, and #Utah have submitted a big share of sequences with specimen collection dates on or after 03/29/2023

XBB.1.5 is still at the top spot; followed by XBB.1.5.15, XBB.1.9.1 & XBB.1.16

3/n

Granular details -#VariantDashboard #USA #15DayTrends

XBB.1.5* (VOI -@WHO) is still ahead of the other lineages!

4/n

.@CDCgov updated variant proportions estimates on 04/07/2023 (updated every Friday)

Expect XBB.1.16 to feature in the CDC-dashboard tomorrow!

Prudent to start tracking XBB.1.5.13 (parent of EK.1* and EK.2*), XBB.1.5.15 and XBB.2.3 as well

https://twitter.com/RajlabN/status/1644355502485413888

4/n

XBB.1.16 has the potential to outcompete all other circulating lineages.

Everyone is closely watching XBB.1.16 hotspots for clues

Tracker: public.tableau.com/app/profile/ra……

5/n

XBB.1.16 is one of the fittest variant in circulation right now.. and is picking up additional mutations... "its the one to watch"

H/T @ErinMPrater @WellatFortune
@FortuneMagazine
fortune.com/well/2023/03/3…

6/n

What to know about the XBB.1.16 COVID variant causing concern in India

H/T @ingridhein @medpagetoday
abcnews.go.com/Health/xbb116-…

7/n

Predicted Immune Escape and ACE2 binding of top lineages in USA (relative to BA.2)

Bivalent boosters (OG/Omicron.BA.5) will potentially protect the boosted from getting severe disease/ hospitalizations.

Get updated if you haven't already! public.tableau.com/app/profile/ra…

8/n

#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19
public.tableau.com/app/profile/ra……

9/n

#COVID19 #Hospitalizations in the #UnitedStates

>60 yr old & immunocompromised Have a good look at @CDCgov info on #Boosters!

#Ventilate Indoor spaces

Sick? --> Wear a good quality #Mask!

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…

10/n

Circulating recombinant lineages - USA #15DayTrends

XBB.1.5* is still the top recombinant in circulation!

11/n

Status of the latest #COVID19 Wave in #Washington

Top circulating lineages in WA (#15DayTrends)

XBB.1.5 (67.8%)
XBB.1.5.5 (5.9%)
XBB.1.9.1 (4%)
XBB.1.16 (3.3%)
XBB.1.5.21 (3.3%)
XBB.1.5.15 (2.6%)
XBB.2.3 (2%)

12/n

Status of the latest #COVID19 Wave in #NewYork

Top circulating lineages in NY (#15DayTrends)

XBB.1.5 (59.2%)
XBB.1.9.1 (10.8%)
XBB.1.5.15 (5.4%)
XBB.1.16 (3.1%)
XBB.1.5.13 (3.1%)
XBB.1.5.4 (3.1%)
XBB.1.5.1 (1.5%)
XBB.1.5.3 (1.5%)

13/n

Status of the latest #COVID19 Wave in #California

Top circulating lineages in CA (#15DayTrends)

XBB.1.5 (65.6%)
XBB.1.5.15 (8.1%)
XBB.1.16 (5.5%)
XBB.1.9.1 (3.3%)
XBB.2.3 (1.5%)
EG.1 (1.5%)

14/n

USA Airport surveillance update #15DayTrends

167 sequences from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia) from @CDCgov's Traveler-Based Genomic Surveillance Program.

*Includes pooled swabs & Many bad QC seqs

15/n

As COVID Tracking Wanes, Are We Letting Our Guard Down Too Soon?

"Closing up shop too early could mean we are blindsided"

“You have to maintain a base level of sequencing for new variants"

H/T @DohenyKathleen @WebMD

webmd.com/covid/news/202…… 16/n