We have an exciting new #preprint on @medrxivpreprint ! A novel class of #primaryimmunodeficiency, with the discovery of ITPR3 mutations in two families with combined immunodeficiency. As always, studying #PID teaches us so much about biology! 1/8
The work is based on patients identified @UZLeuven by Rik Schrijvers and @IsabelleMeyts. Both patients had a combined #immunodeficiency with sensitivity to infections, one complicated by peripheral #neuropathy and one by #autoimmune hemolytic anemia. Over to the gene hunters! 2/8
Mutations in ITPR3 were identified by Erika Van Nieuwenhove and Frederik Staels. ITPR3 is part of a #Calcium channel, so we turned to the Serysheva lab @Irina52948708 to predict the impact on structure. Clear as day, the mutations change the charge of the channel. 3/8
Collaborating with Lara Terry and David Yule @UofR let us calculate the exact functional defect caused by this mutation: it is 100-fold less efficient at transporting #Calcium signals than the wildtype allele. 4/8
So lucky to have a world leader in Calcium signalling at @LeuvenU, with Geert Bultynck. The incredibly talented @JulikaNeumann was able to develop new methods with @LMCSLeuven to measure the defect that patient #whitebloodcells have in responding to activation. 5/8
Why does this matter? #Calcium is like #WiFi. Your smartphone is crippled without data, #whitebloodcells are crippled without #Calcium channels. Our patients have all the #whitebloodcells they need, but without #signalling they just sit there while infections rage! 6/8
Thankfully our clinical friends could treat both patients. One required a bone-marrow transplant, as their #whitebloodcells were just ignoring all signals. The other has a more mild mutation (their cells are just hard-of-hearing), and is doing well with antibody transfusion. 7/8
A small primer on this #NobelPrize award today. This prize was for combining two separate fields of immunology research - genetic research on IPEX and immunology research of regulatory T cells (#Tregs), with enormous impact on biology/medicine
First, let's talk about IPEX. It is short for "Immune dysregulation, polyendocrinopathy, enteropathy, X-linked syndrome", which is a bit of a mouth-full. Essentially, it is a severe autoimmune disease, impacting boys, which is fatal in early childhood unless treated.
IPEX was rather mysterious, but because of the inheritance pattern it was quickly mapped to the X chromosome. Several teams of scientists worked on mapping this disorder down to the gene level, with Brunkow and Ramsdell leading the team that identified FOXP3 as the causative gene
Biggest paper yet from the lab out now in @ImmunityCP! It is a massive #openscience resource on #tissueTregs, and what makes #Tregs tick in the #tissues. Spoiler-alert: Tissue Tregs are really different from what we all thought. 🧵 1/21
Where do #TissueTregs come from? The previous standard model is the "seeding and specialisation" model, where #Tregs enter from tissues, turn on a dedicated transcriptional program per #tissue, and dwell indefinitely in that tissue as specialised cells. 2/21
We had examples of #fatTregs and #muscleTregs becoming unique permanent residents, and the
@ERC_Research funded us to undertake an overly ambitious project to look at everything, everywhere, all at once. Only possible because of the #dreamteam of @jldvib and @olivertburton. 3/21
Biggest paper yet from the lab now a #preprint on @biorxivpreprint. A massive #openscience resource on #tissueTregs, and what makes #Tregs tick in the #tissues.
Spoiler-alert: Tissue Tregs are really different from what we all thought. 🧵 1/21
Go back to that sweet innocent time in the spring of 2016. #Brexit was an unlikely joke, @HillaryClinton was cruising to a landslide against some reality TV starlet, and we thought that #TissueTregs formed by seeding tissues and differentiating into unique terminal cells. 2/21
We had examples of #fatTregs and #muscleTregs becoming unique permanent residents, and the @ERC_Research funded us to undertake an overly ambitious project to look at everything, everywhere, all at once.
Only possible because of the #dreamteam of @jldvib and @olivertburton. 3/21
For anyone doing #flowcytometry, would you like to have a new protocol that reduces your #antibody costs by ~10-fold and also gives you higher quality data, with better signal-to-noise ratio?
Bottom-line-up-front: stain overnight. Antibody staining is sensitive to both dilution and time, so a titration that gives crummy staining in 30' can actually give beautiful staining overnight. The best part is, that lower dilution gives less background, for better separation 2/6
You can see this quite clearly with even tricky staining, like #Foxp3 and #cytokines. The overnight stain gives a stronger positive signal without increasing the background at all. Plus your cells are ready in the morning, when the cytometer is free, rather than 8pm at night! 3/6
We had a great post-doc, @EmanuelaPasciu1, drive a project showing #Tcells in mouse and human brain, with key functions. Among these T cells were a small population of anti-inflammatory #Tregs, again in mouse and human. 3/12 cell.com/cell/fulltext/…
I am really thrilled to release #AutoSpill onto @biorxivpreprint. It is a novel method for applying compensation to #flowcytometry data, which reduces the error by ~100,000-fold. It is thanks to AutoSpill that we can push machines to their max colours
So how does #AutoSpill work? If you just want to compensate your data, simply upload your single colour controls to autospill.vib.be and then copy the spillover matrix to your #flowcytometry program of choice
@CarlyEWhyte can walk you through the whole process in <2'