For anyone doing #flowcytometry, would you like to have a new protocol that reduces your #antibody costs by ~10-fold and also gives you higher quality data, with better signal-to-noise ratio?
Bottom-line-up-front: stain overnight. Antibody staining is sensitive to both dilution and time, so a titration that gives crummy staining in 30' can actually give beautiful staining overnight. The best part is, that lower dilution gives less background, for better separation 2/6
You can see this quite clearly with even tricky staining, like #Foxp3 and #cytokines. The overnight stain gives a stronger positive signal without increasing the background at all. Plus your cells are ready in the morning, when the cytometer is free, rather than 8pm at night! 3/6
We started to implement this on all of our large multicolour #flowcytometry panels, and now literally spend 10-fold less on antibodies. Especially with the expensive novel dyes, this can really be a game-changer to your budget. Better data, lower cost: #SmartScience. 4/6
For the full protocol detail, see @CarlyEWhyte and @olivertburton's paper in @Curr_Protocols, which goes through different fixatives, titration approaches and general optimisation of the method. 5/6
Oh, you wanted more? Okay, then if you follow our staining protocol and get cheaper and better quality data, then you should also compensate that flow data with #AutoSpill and reduce your compensation error by ~10,000-fold. Available in FlowJo v10.7. 6/6
We had a great post-doc, @EmanuelaPasciu1, drive a project showing #Tcells in mouse and human brain, with key functions. Among these T cells were a small population of anti-inflammatory #Tregs, again in mouse and human. 3/12 cell.com/cell/fulltext/…
We have an exciting new #preprint on @medrxivpreprint ! A novel class of #primaryimmunodeficiency, with the discovery of ITPR3 mutations in two families with combined immunodeficiency. As always, studying #PID teaches us so much about biology! 1/8
The work is based on patients identified @UZLeuven by Rik Schrijvers and @IsabelleMeyts. Both patients had a combined #immunodeficiency with sensitivity to infections, one complicated by peripheral #neuropathy and one by #autoimmune hemolytic anemia. Over to the gene hunters! 2/8
Mutations in ITPR3 were identified by Erika Van Nieuwenhove and Frederik Staels. ITPR3 is part of a #Calcium channel, so we turned to the Serysheva lab @Irina52948708 to predict the impact on structure. Clear as day, the mutations change the charge of the channel. 3/8
I am really thrilled to release #AutoSpill onto @biorxivpreprint. It is a novel method for applying compensation to #flowcytometry data, which reduces the error by ~100,000-fold. It is thanks to AutoSpill that we can push machines to their max colours
So how does #AutoSpill work? If you just want to compensate your data, simply upload your single colour controls to autospill.vib.be and then copy the spillover matrix to your #flowcytometry program of choice
@CarlyEWhyte can walk you through the whole process in <2'
Don't be too scared off by the comments you have here. Most only really apply to the US. I'm assuming that you are doing a biomed PhD in the UK based on your profile, so a few tips... 1/n
That said, you will doubt it. Especially at the 3-6 month period and at ~2 years in. That is normal.
2/n
@sakisci@BetterAcademia@AcademicChatter@OpenAcademics Second, it is your PhD, but the lab's project. You should aim to become the intellectual leader of the project after around a year, but always lead with humility. Others around you will always know more than you on specific techniques or domain knowledge. 3/n