Adrian Liston Profile picture
Nov 14 6 tweets 5 min read
For anyone doing #flowcytometry, would you like to have a new protocol that reduces your #antibody costs by ~10-fold and also gives you higher quality data, with better signal-to-noise ratio?

Yes? Then read work by @olivertburton and @CarlyEWhyte. 1/6

…rentprotocols.onlinelibrary.wiley.com/doi/epdf/10.10… Image
Bottom-line-up-front: stain overnight. Antibody staining is sensitive to both dilution and time, so a titration that gives crummy staining in 30' can actually give beautiful staining overnight. The best part is, that lower dilution gives less background, for better separation 2/6 Image
You can see this quite clearly with even tricky staining, like #Foxp3 and #cytokines. The overnight stain gives a stronger positive signal without increasing the background at all. Plus your cells are ready in the morning, when the cytometer is free, rather than 8pm at night! 3/6 Image
We started to implement this on all of our large multicolour #flowcytometry panels, and now literally spend 10-fold less on antibodies. Especially with the expensive novel dyes, this can really be a game-changer to your budget. Better data, lower cost: #SmartScience. 4/6 Image
For the full protocol detail, see @CarlyEWhyte and @olivertburton's paper in @Curr_Protocols, which goes through different fixatives, titration approaches and general optimisation of the method. 5/6

…rentprotocols.onlinelibrary.wiley.com/doi/epdf/10.10… Image
Oh, you wanted more? Okay, then if you follow our staining protocol and get cheaper and better quality data, then you should also compensate that flow data with #AutoSpill and reduce your compensation error by ~10,000-fold. Available in FlowJo v10.7. 6/6

nature.com/articles/s4146…

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More from @LabListon

May 26
Excited to share our new paper out at @NatImmunol today! We discovered the limiting factor for #brain #Tregs is #IL2, and developed a new #genetherapy to treat #traumaticbraininjury and other #neuroinflammatory pathologies. 1/12

nature.com/articles/s4159…
The work started more than 10 years ago, after my brother Russell died following a #traumaticbraininjury. The more I read into it, the more treatable #neuroinflammation seems. Obviously there is a #brain delivery problem, but stopping #inflammation is basic #immunology! 2/12 Image
We had a great post-doc, @EmanuelaPasciu1, drive a project showing #Tcells in mouse and human brain, with key functions. Among these T cells were a small population of anti-inflammatory #Tregs, again in mouse and human. 3/12
cell.com/cell/fulltext/…
Read 12 tweets
Jun 8, 2021
We have an exciting new #preprint on @medrxivpreprint ! A novel class of #primaryimmunodeficiency, with the discovery of ITPR3 mutations in two families with combined immunodeficiency. As always, studying #PID teaches us so much about biology! 1/8

medrxiv.org/content/10.110…
The work is based on patients identified @UZLeuven by Rik Schrijvers and @IsabelleMeyts. Both patients had a combined #immunodeficiency with sensitivity to infections, one complicated by peripheral #neuropathy and one by #autoimmune hemolytic anemia. Over to the gene hunters! 2/8
Mutations in ITPR3 were identified by Erika Van Nieuwenhove and Frederik Staels. ITPR3 is part of a #Calcium channel, so we turned to the Serysheva lab @Irina52948708 to predict the impact on structure. Clear as day, the mutations change the charge of the channel. 3/8
Read 8 tweets
Jul 1, 2020
I am really thrilled to release #AutoSpill onto @biorxivpreprint. It is a novel method for applying compensation to #flowcytometry data, which reduces the error by ~100,000-fold. It is thanks to AutoSpill that we can push machines to their max colours

biorxiv.org/content/10.110…
#AutoSpill is a beautiful example of what #maths can add to #immunology, led by the talented Dr Carlos Roca.

It has really open up my eyes to the potential of #computationalbiology, and is the reason why we have a new #datascience position available:

babrahaminstitute.livevacancies.co.uk/#/job/details/…
So how does #AutoSpill work? If you just want to compensate your data, simply upload your single colour controls to autospill.vib.be and then copy the spillover matrix to your #flowcytometry program of choice

@CarlyEWhyte can walk you through the whole process in <2'
Read 20 tweets
May 4, 2020
@sakisci @BetterAcademia @AcademicChatter @OpenAcademics I'm a first gen high-school graduate, now first gen PhD and professor :)

Don't be too scared off by the comments you have here. Most only really apply to the US. I'm assuming that you are doing a biomed PhD in the UK based on your profile, so a few tips... 1/n
@sakisci @BetterAcademia @AcademicChatter @OpenAcademics First, getting into a PhD program is tough. You've made it, congratulations! By definition you have the intellectual ability to finish. Never doubt that.

That said, you will doubt it. Especially at the 3-6 month period and at ~2 years in. That is normal.

2/n
@sakisci @BetterAcademia @AcademicChatter @OpenAcademics Second, it is your PhD, but the lab's project. You should aim to become the intellectual leader of the project after around a year, but always lead with humility. Others around you will always know more than you on specific techniques or domain knowledge. 3/n
Read 21 tweets

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