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Raj Rajnarayanan Profile picture
@RajlabN
May 25 • 7 tweets • 8 min read Twitter logo Read on Twitter
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

31.5% XBB.1.5
11.8% XBB.1.16
5.3% XBB.1.9.1
2.5% XBB.1.16.1
2.1% FL.4
2.1% XBB.1.5.49

[Includes ~44.5% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 05/24/23

1/n Image
Sequence count by US States

A total of 527 sequences were submitted with specimen collection dates on or after 05/09/2023

2/n Image
.@CDCgov updated variant proportions estimates on 05/12/2023 (updated every other Friday)

Nowcast moves to 2-week estimates


3/n
#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19
public.tableau.com/app/profile/ra…

4/n
#COVID19 #Hospitalizations in the #UnitedStates

>60 yr old & immunocompromised Have a good look at @CDCgov info on #Boosters!

#Ventilate Indoor spaces

Sick? --> Wear a good quality #Mask!

Hospital Tracker (by States, by age group):public.tableau.com/app/profile/ra…

5/n
Status of the #COVID19 in #NewYork (#Bellwether State)

XBB.1.5 is still the top circulating lineage in NY (#15DayTrends)

>> includes airport surveillance sequences <<

Hospital data from @HealthNYGov

6/n ImageImage
How the End of the COVID Public Health Emergency (#PHE) May Affect You

H/T @DohenyKathleen @WebMD
webmd.com/covid/news/202…



7/n

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More from @RajlabN

Raj Rajnarayanan Profile picture
May 24
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):
30.3% XBB.1.5
11.0% XBB.1.16
5.9% XBB.1.9.1
3.4% XBB.1.16.1
1.8% FL.4
1.6% EG.2
1.4% XBB.2.3.2

[Includes ~49% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 05/23/23
1/n Image
Sequence count by US States

A total of 564 sequences were submitted with specimen collection dates on or after 05/08/2023

2/n Image
.@CDCgov updated variant proportions estimates on 05/12/2023 (updated every other Friday)

Nowcast moves to 2-week estimates


3/n
Read 7 tweets
Raj Rajnarayanan Profile picture
May 23
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

37.9% XBB.1.5
9.2% XBB.1.16
4.4% XBB.1.9.1
2.8% XBB.1.16.1
2.2% XBB.1.9.2
2.0% XBB.2.3.2

[Includes ~26% Airport surveillance seqs]

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7| 05/22/23

1/n Image
Sequence count by US States

A total of 497 sequences were submitted with specimen collection dates on or after 05/07/2023

2/n Image
.@CDCgov updated variant proportions estimates on 05/12/2023 (updated every other Friday)

Nowcast moves to 2-week estimates

3/n
Read 7 tweets
Raj Rajnarayanan Profile picture
May 2
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

56.2% XBB.1.5
6.1% XBB.1.9.1
4.5% XBB.1.16
2.2% XBB.1.5.1
2.1% XBB.1.9.2
1.4% XBB.1.5.13
1.4% XBB.1.5.15
1.4% XBB.1.5.17

#SARSCoV2 Tracker: tinyurl.com/mryj4uu7 Updated: 05/01/23

1/n Image
#COVID19 #VariantDashboard - #USA
[without sequences from "Airport Surveillance"]

Top lineages (#15DayTrends):

XBB.1.5 (61.7%)
XBB.1.9.1 (5.5%)
XBB.1.16 (2.4%)
XBB.1.5.1 (2.3%)
XBB.1.5.13 (1.6%)
XBB.1.5.17 (1.6%)
XBB.1.9.2 (1.6%)
XBB.1.5.15 (1.3%)
FD.2 (1%)

2/n Image
Airport sequences constitute ~12.4% of sequences with sample collection dates in the last 15 days (#15DayTrends)

Its going to be a three way race to outcompete XBB.1.5*: XBB.1.9* vs XBB.1.16* vs XBB.2.3*

As of now, XBB.1.16* family looks to over take everything else!

3/n Image
Read 17 tweets
Raj Rajnarayanan Profile picture
May 1
Tracking #SARSCoV2 lineage XBB.1.16* (#Arcturus) over time - Globally

Total Sequences : 8,182 (circulating in 43 countries)

Tracker:public.tableau.com/app/profile/ra…

Note: Recent Epi weeks are incomplete; Includes seqs from targeted & Airport surveillance

Updated:05/01/23 Image
Tracker now includes all the designated XBB.1.16* sub-lineages

Tracking #SARSCoV2 lineage XBB.1.16* (#Arcturus) over time - Globally Image
Read 4 tweets
Raj Rajnarayanan Profile picture
May 1
#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

49.7% XBB.1.5
8.3% XBB.1.16
8.3% XBB.1.9.1
2.3% XBB.1.9.2
2.1% XBB.1.16.1
1.6% XBB.1.5.1
1.4% XBB.2.3

>> Low Sequence Count <<
#SARSCoV2 Tracker: tinyurl.com/mryj4uu7 Updated: 04/30/23

1/n
#COVID19 #VariantDashboard - #USA
[without sequences from "Airport Surveillance"]

Top lineages (#15DayTrends):

XBB.1.5 (61.1%)
XBB.1.9.1 (8.0%)
XBB.1.16 (3.5%)
FL.2 (1.7%)
XBB.1.5.1 (1.7%)
XBB.1.5.17 (1.7%)
XBB.1.9.2 (1.4%)
XBB.1.5.15 (1.2%)

2/n Image
Airport sequences constitute a significant proportion of sequences (~27%; #15DayTrends)

Its going to be a three way race to outcompete XBB.1.5*: XBB.1.9* vs XBB.1.16* vs XBB.2.3*

As of now, XBB.1.16* family looks to over take everything else!

3/n Image
Read 18 tweets
Raj Rajnarayanan Profile picture
Apr 30
Tracking #SARSCoV2 #Lineages - Globally

Top lineages -#20DayTrends (#G20):

XBB.1.5 (36.6%)⬇️
XBB.1.9.1 (11.5%)⬆️
EG.1 (4.7%)⬆️
XBB.1.16 (4.4%)⬆️
XBB.1.9.2 (3.1%)
XBB.2.3 (1.8%)
XBB.1.5.13 (1.6%)
XBB.1.16.1 (1.5%)

public.tableau.com/app/profile/ra…

Updated 04/29/23 Image
Granular details #Global #20DayTrends

This analysis includes all designated #SARSCoV2 sequences submitted to @GISAID with sample collection dates on or after 04/09/2023 (14,137 sequences) Image
#USA, #Austria, #France & #Canada have submitted a lion's share of sequences with sample collection dates on or after 04/09/2023 ...followed by #UnitedKingdom, #Australia, #Germany, #Sweden, #SouthKorea, #Singapore, #China, #Spain Image
Read 8 tweets

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