Thread by @RajlabN

#COVID19 #VariantDashboard - #UnitedStates

TOP lineages (#15DAYTRENDS):

44.6% XBB.1.5
17.2% BQ.1.1
3.7% BQ.1
2.9% XBB.1
1.7% BQ.1.1.4
1.2% BQ.1.2
1.2% BQ.1.3
1.1% BQ.1.1.18

Tracker: tinyurl.com/mryj4uu7
Updated: 01/31/2023

1/n

Sequence count by US State

#NorthCarolina, #NewYork, #California and #Washington have submitted a big share of sequences

XBB.1.5 stays strong at the top spot and is establishing a clear foot print outside NE USA!

2/n

USA Airport surveillance update #15DayTrends

97 sequences from 6 US States (#California, #NewYork, #Washington, #NewJersey, #Georgia and #Virginia)

3/n

Granular details -#VariantDashboard #USA #15DayTrends

XBB.1.5 is surging ahead, leaving the rest of the swarm behind!

4/n

.@CDCgov updated variant proportions estimates on 01/27/2023 (updated every Friday)

CH.1.1 makes an entry @ 1.5% in the CDC Variant Dashboard

XBB.1.5 is leading at the top!

https://twitter.com/RajlabN/status/1618990748824932355

5/n

Top circulating #SARSCOV2 lineages around the world 01/11 to 01/31/23 (#20DayTrends):

BQ.1.1 (18.4%)
XBB.1.5 (13.5%)
CH.1.1 (6.1%)
BQ.1 (3.7%)
XBF (2.4%)
XBB.1 (2.3%)
BA.5.2.48 (2.3%)
BF.7 (2.0%)
BQ.1.9 (1.9%)
CH.1.1.1 (1.7%)
BQ.1.1.20 (1.3%)
BQ.1.1.13 (1.2%)

6/n

Predicted Immune Escape and ACE2 binding of top lineages in USA (relative to BA.2)

Bivalent boosters (OG/Omicron.BA.5) will potentially protect the boosted from getting severe disease/hospitalizations.

Please get #boosted ASAP!

public.tableau.com/app/profile/ra…

7/n

#Hospital #Capacity - (by State/Division)

All hospitalizations not just COVID-19

public.tableau.com/app/profile/ra…

8/n

#COVID19 #Hospitalizations in the #UnitedStates

Please get #boosted (especially > 50 yr old and immune compromised) and #MaskUP!

Hospital Tracker (by States, by age group): public.tableau.com/app/profile/ra…

9/n

Status of the latest #COVID19 Wave in #NewYork

XBB.1.5 is still the top circulating lineage in NY

10/n

Circulating recombinant lineages - USA #15DayTrends

XBB.1.5 is still the top recombinant in circulation!

11/n

Tracking circulating #SARSCoV2 lineages, Cases, #COVID19 #hospitalizations 👀 in #California

XBB.1.5 is the top circulating lineage in CA

Top circulating lineages

XBB.1.5 (30.6%)👀
BQ.1.1 (15.7%)
BQ.1 (4.2%)
BQ.1.1.32 (4.2%)
BQ.1.28 (2.8%)
BQ.1.25.1 (2.3%)
XBB (2.3%)

12/n

Weekly Trends in Number of COVID-19 Deaths and Weekly Case Rate in The United States Reported to CDC, per 100,000 population.

covid.cdc.gov/covid-data-tra…

13/n

Tracking circulating #SARSCoV2 lineages, Cases, #COVID19 #hospitalizations 👀 in #Arizona

Only 5 sequences with sample collection dates in the last 15 days (1 XBB.1.5 & 4 BQ.1.1*)

14/n

Tracking circulating #SARSCoV2 lineages, Cases, #COVID19 #hospitalizations in #Texas

XBB.1.5 is the top circulating lineage in TX

Top circulating lineages

XBB.1.5 (34.3%)👀
BQ.1.1 (20.6%)
XBB.1 (12.3%)

15/n

Tracking circulating #SARSCoV2 lineages, Cases, #COVID19 #hospitalizations in #NorthCarolina

XBB.1.5 is the top circulating lineage in NC

Top circulating lineages

XBB.1.5 (41.1%)👀
BQ.1.1 (20.0%)
BQ.1 (6.3%)
XBB.1 (3.7%)

16/n